Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C23
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   0.97 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   1.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   2.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   2.2  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   2.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   3.0  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   3.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   3.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   5.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    23   6.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    23   6.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   9.1  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    23   9.1  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 VPSDGNSDHVVIANPDPFFSQPSNGPSGHYEPI 205
           V  DG +  VVI  P   F+ P+N  S ++ P+
Sbjct: 405 VTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 59  LAMAVANRVTWWTIVGVPSDGNSDHVVIANP--DPFFSQPSNG-PSGHYEPISTGPAYVD 229
           L M+V NR+ W    G P D  S     ANP  +   SQ S G  S  Y+ + T     +
Sbjct: 537 LWMSVLNRLLWKNEHGSPKDIRSAASTPANPVYNRSSSQTSKGYNSSDYDLLRTHSLDEN 596

Query: 230 FNHP 241
            N P
Sbjct: 597 VNSP 600


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 164 SQPSNGPSGHYEPISTGPAYVDFNHPNYPAQGIR 265
           S P+ G SG+Y+  ST P      +P+     IR
Sbjct: 438 SSPAWGTSGYYDVSSTSPVAPSDRNPSRQYNSIR 471


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 153  SGFAITTWSLLPSDGTPTIVHHVT-LFATAMANTPKKKTRSFHCRIV 16
            S F +  W++LP  G P +V  +     ++ +N      +  H  IV
Sbjct: 899  SCFVLRIWNMLPETGVPILVADINPQMTSSSSNETSHLIQELHSLIV 945


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 6    TTLTLFDNESFVFSSSAYWPWLSQTESRGGQ 98
            T  + FDN   +FSSS+  P LS   S  G+
Sbjct: 3744 TLASTFDNSQSIFSSSSGVPGLSTKSSSLGK 3774


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 133 RCYSEPGSFLLSTIKRS*RTL*THKHWTGVRR 228
           +C +EP S   STI+          HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 NSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDF 232
           N D++  ++ DP +++PS+ P  H  PI   P    F
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHPL-HPPPILGLPVPAQF 502


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +2

Query: 173 SNGPSG---HYEPISTGPAYVD 229
           S GP+G   HY P +TG A +D
Sbjct: 368 STGPNGAVIHYSPPATGSAIID 389


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 79   VCDSHGQYAEEENTKLSLSNSVRVVC 2
            V D HGQ+A E+  +++     RV+C
Sbjct: 1503 VIDLHGQFAAEKLEQIAKRFPTRVLC 1528


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 110 PSDGNSDHVVIANPDPFFSQPSNGP 184
           P+ GN D+   +   P +SQPS  P
Sbjct: 85  PAVGNQDYSKPSYSQPSYSQPSQPP 109


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 SNGPSGHYEPISTGPAYVDFNHPN 244
           ++ PSG  + +   P YVD  HP+
Sbjct: 507 TSSPSGSKKFVMWNPPYVDPKHPD 530


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 98  IVGVPSDGNSDHV--VIANPDPFFSQPSNGPSGHYEPIST 211
           +V  P+  N  HV  V A+P+P  S PSNGP+    P+ST
Sbjct: 166 VVSNPAAANV-HVLSVAASPNP--STPSNGPA----PVST 198


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 35   LRVFFFGVLAMAVANRVTWWTIV 103
            L +  FG + + VA+ + WW  +
Sbjct: 1519 LMMLLFGTMTVWVAHLIYWWVSI 1541


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +2

Query: 86  TWWTIVGVPSDGNSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYP 250
           TW  I GV     S H      +P   +PS+ P       +  P   +F    YP
Sbjct: 79  TWSHIEGVYEMLKSRHD--RQNEPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,577
Number of Sequences: 5004
Number of extensions: 27847
Number of successful extensions: 61
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)