Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C23
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 32 0.089
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 28 1.1
02_01_0406 - 2958933-2962076 28 1.4
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 1.9
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 27 1.9
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 27 1.9
03_02_0373 - 7865708-7866310,7869547-7870443 27 2.5
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 27 3.3
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 26 4.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 26 4.4
03_05_0517 - 25118232-25118730,25119002-25119273 26 4.4
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595... 25 7.7
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 25 7.7
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 25 7.7
07_01_0601 + 4464745-4465010,4465274-4466582 25 7.7
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 25 7.7
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 25 7.7
01_03_0204 + 13771346-13772680 25 7.7
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 31.9 bits (69), Expect = 0.089
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 171 G*EKKGSGFAITTWSLLPSDGTPTIVHHVTLFATAMANTPKKK 43
G + GSG I++W LPS T+ H VT T TP KK
Sbjct: 263 GGDSPGSGGKISSWKKLPSPAEKTL-HKVTEPTTEEKTTPTKK 304
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 163 EERIRVRYNNVVTIAVRWNTHYCPPRDSVCDSHGQYAEEENTKLSLSNSV 14
E RI + V + WNT PP + ++ Y E+E T L++ ++
Sbjct: 329 EMRINCVHPGFVNTEINWNTGIIPPEEGAREAL-PYDEQETTNLAVQCAI 377
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 95 TIVGVPSDGNSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNY 247
T++ +P ++ + +P F NGPS Y ++ P ++ +H N+
Sbjct: 515 TLMNLPMLRSTSDIAHLDPGAFELPVYNGPSFQYRTLTGFPTLLNLSHNNF 565
>06_03_1445 - 30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 143 ANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQ 256
A PDP S P PSGHY PI GP V P+ A+
Sbjct: 988 AFPDPHRSAP---PSGHYNPI--GPPDVPGLEPSCSAR 1020
>06_03_1433 - 30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 143 ANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQ 256
A PDP S P PSGHY PI GP V P+ A+
Sbjct: 988 AFPDPHRSAP---PSGHYNPI--GPPDVPGLEPSCSAR 1020
>06_03_1416 + 30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 143 ANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQ 256
A PDP S P PSGHY PI GP V P+ A+
Sbjct: 988 AFPDPHRSAP---PSGHYNPI--GPPDVPGLEPSCSAR 1020
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 211 WTGVRRFQSSQLSSPRDTISLSPV 282
W +RRF +++L +PR +L P+
Sbjct: 128 WRAIRRFSTAELLAPRRLAALQPL 151
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 179 GPSGHYEPISTGPAYVD--FNHPNYPAQGIRSASRP 280
GP+G P PA +H YP +G+R A+ P
Sbjct: 144 GPAGLMVPAVESPAAAAAAVSHCRYPPRGVRGAAHP 179
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +2
Query: 143 ANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQGIRSASRPWW 286
A P PF P P +P TG + P P+Q + P W
Sbjct: 201 AQPPPFGGPPGAAP----QPAPTGGLRTPYGGPPAPSQQVPFGGAPQW 244
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +2
Query: 164 SQPSNGPSGHYEPIS------TGPAYVDFNHPNYPAQGIRSASRP 280
S P N S Y P S T P+YV + P+ P I SA+ P
Sbjct: 1609 SSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSP 1653
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +2
Query: 152 DPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQGIRSAS 274
D FF++ P G+ T P VD P P + S
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAFTQDS 77
>12_02_0758 -
22858221-22858367,22859362-22859460,22859505-22859557,
22859674-22859728,22860204-22860284,22860779-22861213
Length = 289
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 32 KLRVFFFGVLAMAVANRVTWWTIVGVPSDGNSDHVVIANPDPFFSQPS-NGPSGHY 196
+LR F R WW + + ++A+P P F P+ P+ HY
Sbjct: 10 RLRASFIHRCRSGALFRWCWWGYSVSAASAVTASALLASPVPRFQNPNLQAPAAHY 65
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 3 QTTLTLFDNESFVFSSSAYWPWLSQTESRG 92
QT + + D E FVF A PW ++ G
Sbjct: 268 QTVIIVKDTEGFVFGGYASHPWERHSDFYG 297
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +2
Query: 80 RVTWWTIVGVPSDGNSDHVVIANPDPFF------SQPSNGPSGHYEPISTGPAYVDFNHP 241
R+ W I+G S N + V NP+ SQ +NGPS + + T P V +N
Sbjct: 161 RMKLWEILGGTSQ-NKEAVASPNPEDIETPCQPKSQIANGPSSGRQKVFTSP--VPYNIK 217
Query: 242 NYPAQ-GIRSASRP 280
PAQ ++A++P
Sbjct: 218 T-PAQFNSQTANKP 230
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 125 SDHVVIANPDPFFSQPSNGPSGHYEPISTGPA 220
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 44 FFFGVLAMAVANRVTWWTIVGVPSD 118
FF G+L + + +WT+VG+ D
Sbjct: 302 FFAGLLLLLMPEENAFWTLVGIIDD 326
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 122 NSDHVVIANPDP-FFSQPSNGPSGHYEPISTGPAYV 226
NSD NP+ ++ P P Y P + GP YV
Sbjct: 528 NSDSGPHRNPESKWYISPEEWPEEKYPPWAHGPGYV 563
>01_03_0204 + 13771346-13772680
Length = 444
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 122 NSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPN 244
N+ V++AN Q + PSGH+ PI+ + F H N
Sbjct: 282 NNSSVIVAN------QANIAPSGHFYPIALQSSCSTFLHSN 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,977
Number of Sequences: 37544
Number of extensions: 199700
Number of successful extensions: 551
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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