Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C23
(290 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 32 0.058
At5g23650.1 68418.m02773 myb family transcription factor contain... 26 5.0
At3g49510.1 68416.m05411 F-box family protein contains Pfam PF00... 26 5.0
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 26 5.0
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 25 6.6
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 25 6.6
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 25 6.6
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 25 6.6
At1g51640.1 68414.m05818 exocyst subunit EXO70 family protein co... 25 6.6
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 25 6.6
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 25 6.6
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 25 8.8
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 25 8.8
At4g18540.1 68417.m02747 expressed protein ; expression support... 25 8.8
At3g27785.1 68416.m03466 myb family transcription factor (MYB118... 25 8.8
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 25 8.8
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 25 8.8
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 32.3 bits (70), Expect = 0.058
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 110 PSDGNSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPAQGIRSAS 274
PS ++ NP+ +S +N P H+ P++ P + P Y A IRS S
Sbjct: 82 PSSSSTPSPPYPNPNYSYSTMANSPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLS 136
>At5g23650.1 68418.m02773 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 337
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/69 (24%), Positives = 26/69 (37%)
Frame = +2
Query: 74 ANRVTWWTIVGVPSDGNSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYPA 253
AN+ T + +P G +++ A SQPS + PI N P
Sbjct: 216 ANQTTLQPSLDIPIYGTHNNIWNAQATQVISQPSQNHPTYDAPIIWNTQVASQPSANIPM 275
Query: 254 QGIRSASRP 280
G + S+P
Sbjct: 276 YGTSTISQP 284
>At3g49510.1 68416.m05411 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 662
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 181 TV*WLREERIRVRYNNVVTIAV 116
T+ W+R+E++ V YN+ VT +
Sbjct: 258 TLSWVRDEKLAVLYNHYVTAEI 279
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 137 VIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHPNYP 250
++A P P+ P+ GP P+S+ PA+ N+P
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFP 282
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Frame = +2
Query: 104 GVPSDGNSDHV--VIANPDPFFSQPS--------------NGPSGHYEPISTGPAY 223
GVPS GN+D V +AN + S P N SG+++P S G Y
Sbjct: 902 GVPSSGNTDTVGAAVANEKKYSSMPDISGLSMSARNMHLPNNKSGYWDPSSGGGGY 957
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 68 AVANRVTWWTIVGVPSDGNSDHVVIANPDPFFSQPSNGPSG 190
AVA+ + W +V + V +P P + + GPSG
Sbjct: 193 AVADSLDWVNLVAYDFYESGSSRVTCSPAPLYDPITTGPSG 233
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 131 HVVIANPDPFFSQPSNG--PSGHYEPIST 211
H IANP+P FS S+ + H EP T
Sbjct: 91 HTPIANPNPNFSSSSSSSTTTAHLEPSLT 119
>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
similarity to Rab6 GTPase activating protein, GAPCenA
[Homo sapiens] GI:12188746; contains Pfam profile
PF00566: TBC domain
Length = 882
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 44 FFFGVLAMAVANRVTWWTIVGVPSD 118
FF G+L + + +WT+VG+ D
Sbjct: 411 FFAGLLLLLMPEENAFWTLVGIIDD 435
>At1g51640.1 68414.m05818 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit contains Pfam domain PF03081: Exo70 exocyst
complex subunit;
Length = 660
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 263 VSLGLDNWDD*NRRTPVQCLWVHN 192
++L LD W N+ T + C+++ N
Sbjct: 443 IALNLDAWSSSNKETALSCIFMMN 466
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 44 FFFGVLAMAVANRVTWWTIV 103
F +G+L ++V + ++WW IV
Sbjct: 225 FGWGLLGLSVVHSLSWWIIV 244
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/49 (26%), Positives = 18/49 (36%)
Frame = +2
Query: 95 TIVGVPSDGNSDHVVIANPDPFFSQPSNGPSGHYEPISTGPAYVDFNHP 241
++ G SD + F ++G SG Y P GP V P
Sbjct: 2 SVSGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 56 VLAMAVANRVTWWTIVGVPSDGNSDHVVIANP 151
V+A V TWW I V + N D + + +P
Sbjct: 554 VVASTVCFGTTWWLITSVENICNVDLLPVGSP 585
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 146 NPDPFFSQPSNGPSGHYEPISTGP 217
NP+P++S P + P+ S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At4g18540.1 68417.m02747 expressed protein ; expression supported
by MPSS
Length = 520
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 53 GVLAMAVANRVTWWTIVGVPSDGNSDHVVIA 145
G+L + ++ W G+ SDG + H+++A
Sbjct: 360 GILGRISPSPLSEWHAFGIISDGKTSHMMLA 390
>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 437
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 208 HWTGVRRFQSSQLSSPRDTISLS 276
HW +R Q S+ + +D ISLS
Sbjct: 281 HWNATKRRQHSRRTKGKDEISLS 303
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
TBP (TATA-binding protein) -interacting protein 120
(TIP120); contains TIGRFAM profile TIGR01612:
reticulocyte binding protein
Length = 1866
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -2
Query: 247 IIGMIEIDVRRSSAYGFIMSARTV*WLREERIRVRYNNVVTIAVRWNTHYCP 92
I+ +E+ + +S GFI S+ + + +E+ R+ + +N+H+CP
Sbjct: 498 ILRDLEVLLLANSLAGFIKSSIFIASIDQEQNEARFCALRWATSLYNSHHCP 549
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 139 NNVVTIAVRW-NTHYCPPRDSVCDSHGQYAEE 47
+N + A+ W N +CP CD +YA++
Sbjct: 102 SNPICTALHWPNKPHCPNPQEQCDYEVKYADQ 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,370,049
Number of Sequences: 28952
Number of extensions: 152373
Number of successful extensions: 425
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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