Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C22
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.62
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.3
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 4.4
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 4.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 4.4
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 4.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 5.8
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.8
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 7.7
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.62
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -1
Query: 204 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 124
+G ++ KS CS PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 262 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 351
PT L SA DVR +S + +FH+Y+
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYS 81
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +3
Query: 276 LGISTTGRTWKLDSDSEISGVPPI------HADKGGEAGPYTKVQGLLSYPEIC 419
LG+S G+T+ L S+ GV + +A KG EA P T V+ L S E C
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC 145
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 345 IHADKGGEAGPYTKVQGLLSY 407
+H + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 180 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 332
P PQ+ + +QN + + + G P K V+ + T DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 116 DNVDQVYDAWDVKVNGAIYVWQ 51
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 5.8
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
Frame = +3
Query: 90 SIINLVDIVNIQAFDYYTPERNPKEAD---YTAPIYAPQNRDPLQNADAAINYWIQNGAP 260
S I L ++ TPE P+ D + +AP + LQN A N N
Sbjct: 705 SFIILKELAQKNLARIQTPENVPRLFDLLRFNDQKFAPAFYNVLQNTLVAKNLEQANRIA 764
Query: 261 THKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLINPN 440
K + T +D ++G KGG + T S E C K +
Sbjct: 765 YGKTRWRVVTLSGQL-IDKSGTMTG-GGTRVKKGGMSSAITSDVSPASV-ETCDKQVQLE 821
Query: 441 QNGKRPHLRKVNDPSKRFGTYAFRLP 518
R HL ++ ++RF + R+P
Sbjct: 822 DTRYRQHLSELESLNQRFTEISERIP 847
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 387 VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDYGEGGF 542
V L+SYP++ ++ + + +LR++N P + F +A P EG F
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSEGFF 1867
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 75 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 170
Y D P I+ V +N+ D T + NP + D
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,048
Number of Sequences: 5004
Number of extensions: 53649
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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