Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C22
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 46 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 41 6e-04
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.6
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 3.4
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 28 5.9
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 5.9
12_02_0292 + 16979550-16980662,16983249-16983731 27 7.8
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 7.8
05_03_0191 - 9521496-9521921 27 7.8
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.4 bits (105), Expect = 2e-05
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 81 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 251
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 252 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 416
G P K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.1 bits (92), Expect = 6e-04
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +3
Query: 63 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 242
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 243 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 416
+ G P KLV+GI GR+W L + D G P A G + G+++Y EI
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEI 323
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 270 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 425
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 205 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 315
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/93 (23%), Positives = 37/93 (39%)
Frame = +3
Query: 216 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQG 395
N + +IN+W+ T G + + S + G A + G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 396 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 494
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 552 KKPRSHLHHNHQEGGRHR 499
++P+SH HH+H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 263 PQTCPWYQHHWTYVEARFR 319
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 7.8
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +3
Query: 27 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 206
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 207 PLQNADAA----INYWIQNGAPTHKLVLGI 284
LQNA AA + Y ++ A H + I
Sbjct: 628 LLQNAFAAAFEFVGYLLKRCAELHDVASSI 657
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 251 WCAYPQTCPWYQHHWTYVEARFR 319
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,119
Number of Sequences: 37544
Number of extensions: 356580
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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