Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C21
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD...    25   9.3  
At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to...    25   9.3  

>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 289

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 6   SGQQRDVSIEDIASARAER 62
           + +Q +VSIEDI  AR ER
Sbjct: 131 AAEQHEVSIEDIDEARLER 149


>At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to
           plant beta-1,3-glucanase bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 335

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 157 FSLSCIVLSCNYSTDKIIFSAGT 225
           F LSCI+L+ NY+T   + +A +
Sbjct: 11  FFLSCIMLTFNYNTSGFVAAANS 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,622,150
Number of Sequences: 28952
Number of extensions: 82789
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)