Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C20
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)                       29   3.9  
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)                    28   5.1  
SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_7452| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)                       27   8.9  

>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
          Length = 501

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 411 LGFELDRNIVRRKFERIIKSLKKESSEYVLNFG 509
           LG + D  + R+++ R+I+ +K+  ++ VL+FG
Sbjct: 16  LGPKFDPPVYRQRYHRVIEVVKEHKAKRVLDFG 48


>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
          Length = 166

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 6   AQATMSTAMWSLFFIVQILLNVSGHSVLDPDTLKDVFGEQDQKYNSPF 149
           A   +S A      + ++LLNV  HS++  + +KD+   + +KY   F
Sbjct: 62  ATGFISRAFVEFVVVHKMLLNVKLHSLMSKENVKDLKSGRSKKYGFVF 109


>SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 231 PSSQDQQGLHYPE*QPLLEQRIPPPLVQ 148
           PSS DQ  L     QPL+E+ I PP ++
Sbjct: 97  PSSVDQSALDQVPQQPLIEELIDPPSME 124


>SB_7452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 511 LPKFKTYSEDSFFKDFII--LSNFLLTMFLSNSNPRTEAISACVGP 380
           L K K Y   + F +  I  L   L+  ++  ++PRT A++   GP
Sbjct: 5   LMKLKVYKGTNLFMESAIIDLPTALVAFYMDTNDPRTPAVAVASGP 50


>SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)
          Length = 529

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 505 KFKTYSEDSFFKDFII--LSNFLLTMFLSNSNPRTEAISACVGP 380
           K K Y   + F +  I  L   L+  ++  ++PRT A++   GP
Sbjct: 2   KLKVYKGTNLFMESAIIDLPTALVAFYMDTNDPRTPAVAVASGP 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,040
Number of Sequences: 59808
Number of extensions: 298787
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)