Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C20
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 438  VRRKFERIIKSLKKESSEYVLNFGSKIYIGQSVEPRQRFAAI 563
            +R+ ++R I  +K    E V+N  SKI +G++V P  +F +I
Sbjct: 7496 IRKSYKREIVVMKNSLEEKVINVFSKI-LGRNVAPTDKFESI 7536


>Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical
           protein F45G2.3 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 177 EQRIPPPLVQTGCCTSDLAPRTHLLKYPGLKH 82
           E+  PPP+++    T D A +TH  + P L H
Sbjct: 517 EELKPPPILRKAVSTPDSARKTHKFQSPLLNH 548


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 453 ERIIKSLKKESSEYVLNFGSKIYIGQSVEPRQRFAAIAQEFTR 581
           ER+   + K S   + +FGS+IY+       +  +A AQE+ +
Sbjct: 357 ERLSYEIMKPSEVLIFDFGSEIYVWTGRYSNKVSSAYAQEYAK 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,058
Number of Sequences: 27780
Number of extensions: 229492
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)