Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C20
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -1

Query: 203 IIRSNSHCLNNGFRRHWYKRAVVLLILLPEHIF 105
           ++ + + CL +  +  W +RA+  L++    +F
Sbjct: 574 VVLAGATCLGSSIKAMWLRRALASLMVFSLGLF 606


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 484 DSFFKDFIILSNFLLTMFLSNSNPRTEAI 398
           D +F+  + LSN   TM  +N +   EAI
Sbjct: 697 DMYFRRQVELSNMYRTMEANNYDTAEEAI 725


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 156 LVQTGCCTSDLAPRTHLLKY 97
           ++    CTS +  RTH + Y
Sbjct: 139 VITAAICTSGIVGRTHTVGY 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,212
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)