Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C19
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm...    31   0.52 
At1g77270.1 68414.m08999 expressed protein                             31   0.52 
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    28   0.88 
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    29   3.7  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   3.7  
At5g26920.1 68418.m03210 calmodulin-binding protein similar to c...    28   4.9  
At3g14850.2 68416.m01876 expressed protein                             28   4.9  
At3g14850.1 68416.m01877 expressed protein                             28   4.9  
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ...    27   8.5  

>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase R2 [Nicotiana
           tabacum] GI:1044912; contains Pfam profile PF00268:
           Ribonucleotide reductase, small chain
          Length = 231

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -1

Query: 647 LQVSGTRTRRCIVVINDNNLIGFRLVFHNLHS-VVARTRVFDAQARVRLCGAIQQARVAV 471
           L+   TR    + +       GF++   N+HS ++ RT+  + + +  +C A++  R  V
Sbjct: 80  LENLSTRFMSDVQISEARAFYGFQIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFV 139

Query: 470 SDAVATA 450
            DA++ A
Sbjct: 140 CDALSCA 146


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 59  TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 235
           TRY+ D +  N R + +  + R  K+LKT + R     + +  P+V  + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.9 bits (59), Expect(2) = 0.88
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +3

Query: 288 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 467
           PV G DG     +C    S     S  +   G  Q VK+ D+Q  +C +++K   G    
Sbjct: 81  PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137

Query: 468 TYGNPCLLNCATQSNPSLSI 527
             G   + NC  +   S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155



 Score = 21.4 bits (43), Expect(2) = 0.88
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 243 TCEEADPCVCTFIYAPVCGTD 305
           + +  DPCV ++  +P C  +
Sbjct: 27  SADSGDPCVLSYTPSPGCAVN 47


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
           P+SC   C R   PVCG D  TY   C      D     +++VK+G C+
Sbjct: 68  PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 372 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNCATQSNPSLSIEHPGPCD 548
           K+RGE C+ +      P  C R    VCG D VTY   C   CA      + +   G CD
Sbjct: 56  KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYW--C--GCADALCHGVRVVKQGACD 110


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
           PVCG+DG TY   C      D      ++VK+G C+
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83


>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 492

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 576 VGFPQPSLCCRKDPGVRCSSSGS 508
           VG PQ SL C +DPG   + SGS
Sbjct: 301 VGHPQRSLQCPQDPGFVVTCSGS 323


>At3g14850.2 68416.m01876 expressed protein
          Length = 321

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 462 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVE 569
           GV +G P   +C  Q  P L  ++PG     V V++
Sbjct: 223 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 258


>At3g14850.1 68416.m01877 expressed protein
          Length = 253

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 462 GVTYGNPCLLNCATQSNPSLSIEHPGPCDNRVKVVE 569
           GV +G P   +C  Q  P L  ++PG     V V++
Sbjct: 155 GVLWGEPAAKSCVGQKEPLLGTKYPGGLPAEVGVLK 190


>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
           identical to SP|P15455 [Plant Mol Biol 11:805-820
           (1988)]; contains Pfam profile PF00190 Cupin and Prosite
           11-S plant seed storage proteins signature PS00305
          Length = 472

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 282 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 410
           YA   G  G  +PN+C L+    L PS  +K   E   ++V D
Sbjct: 21  YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,762
Number of Sequences: 28952
Number of extensions: 338510
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)