Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C17
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.8  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   4.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.3  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   7.3  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 369 C*VPRRCHHAMVSSRCFPS 425
           C +P+ CHH  V   C P+
Sbjct: 646 CVLPKSCHHPQVKHNCHPT 664


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 412 DVFLHQKLRPILDLYRWYRTRTD 480
           DV +HQ L P+L  YR  R RT+
Sbjct: 116 DVEVHQTLEPLLRDYRKLRIRTN 138


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 369 C*VPRRCHHAMVSSRC 416
           C +P R HH+ VS RC
Sbjct: 120 CWLPDRSHHSRVSMRC 135


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 373 RYPDAATMLWFPHDVFLHQKLRPILD 450
           +YPDA  + W  HD  +  K   ++D
Sbjct: 173 KYPDAEWIWWLDHDALVMNKDLNVVD 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,765
Number of Sequences: 5004
Number of extensions: 44581
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)