Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C17
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     29   2.4  
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    27   7.4  
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502...    27   9.8  

>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 322 RTDDRRIWRQVFKLDGVRYPDAATMLWFPHDVFLHQKLRPILDLYRWYRTRT 477
           RTD+ R      ++ GVR P   T     +    H KL P LDL ++ R+R+
Sbjct: 384 RTDEARRVLYEMQITGVR-PSELTYSALLNGYCKHSKLGPALDLIKYLRSRS 434


>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
            21814849-21815049,21815320-21815433,21815513-21815671,
            21816490-21816849,21816928-21817149,21817967-21818093,
            21818887-21819023,21819169-21819292,21819665-21820174,
            21820255-21820436,21820812-21820862,21821114-21821266,
            21821339-21821437,21821519-21821861,21821957-21822030,
            21822105-21823025,21823133-21823257,21823419-21823461,
            21823574-21823762,21824814-21825074,21825228-21825387,
            21826200-21826363,21826523-21827009,21827090-21827431,
            21827519-21827836,21828001-21828041,21828136-21828388,
            21829158-21829261,21830198-21830386,21830543-21831196,
            21831320-21831610,21831739-21831882,21832107-21832205,
            21832549-21832657,21832739-21832923,21833008-21833121,
            21833270-21833401,21833483-21833815,21833945-21834436,
            21834773-21834847,21834917-21835066,21835143-21835241,
            21835463-21835547,21837188-21837375,21837513-21837647,
            21837729-21837849,21838127-21838194,21838275-21838370,
            21838450-21838554,21838665-21838980,21839053-21839142,
            21840011-21840181,21840850-21841010,21841088-21841270,
            21841839-21841940,21842515-21842632,21842704-21842798,
            21842972-21843022,21843107-21843241,21843333-21843436,
            21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 253  NFFFLHDIGSVL*PQSHRMLSDDRTDDRRIWRQVFKLDGVRYPDAATMLWFPHDVF 420
            N   LHD G +L      ++  D  + RRIW+   +    R   +A +  FP   F
Sbjct: 895  NILALHDSGQILEDTGALIMLFDNEEARRIWQNRLQGAIYRASGSAALSSFPEVAF 950


>09_02_0587 -
           10948888-10949124,10949281-10949393,10949830-10950293,
           10951223-10951766,10951902-10951971
          Length = 475

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 517 DGAVGSAAGFRVNRCGFDTTYTNLKS 440
           DGAVG   GF    CG D  Y + K+
Sbjct: 17  DGAVGQEDGFLSIDCGMDPNYGSYKN 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,870
Number of Sequences: 37544
Number of extensions: 284100
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)