Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C17
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50220.1 68418.m06220 F-box family protein contains F-box dom...    29   1.5  
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    29   1.5  
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    29   1.5  

>At5g50220.1 68418.m06220 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 357

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 107 INISRNFKTKSYKTNSIKQDTVDRPLSFTTAYTKSHKYIHSSF 235
           I  SR+F   S  T S+ Q + D  +SF+T  T S K I SSF
Sbjct: 64  IGSSRDF-IDSIVTRSLSQPSRDILISFSTTLTNSLKQISSSF 105


>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 375 PNTIKFENLSPNPSVIRPVVT*HPVRLWSKH*AYIV*KKKIKRSQKTNEECM 220
           P T       PNPSV  P V+  P+ L + + A  + K++  RS  TN   M
Sbjct: 245 PLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSM 296


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 375 PNTIKFENLSPNPSVIRPVVT*HPVRLWSKH*AYIV*KKKIKRSQKTNEECM 220
           P T       PNPSV  P V+  P+ L + + A  + K++  RS  TN   M
Sbjct: 245 PLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSM 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,369,540
Number of Sequences: 28952
Number of extensions: 230974
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)