Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C16
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   0.99 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   5.3  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   5.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.0  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   9.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.2  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 195 TGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSST 82
           + P GG +   A S   TP+P+R+  ++AG R + ++T
Sbjct: 131 SSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATT 168


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 276 VLSRQETASSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGG--TPSPTRARTNSAGD 103
           V + + T  S+   +     PA ++  +  A      PA+ GG   TPS T+A  ++   
Sbjct: 504 VTTNEPTDVSTKSKSAAYHYPATTETVSSKAARSATTPAYVGGATKTPSTTKAVESTPST 563

Query: 102 RISGSSTSLAS 70
             + +ST+ A+
Sbjct: 564 LPTSASTNAAA 574


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 232 ECSGCARGVESAHWS-GGGRHAPS 164
           +CSGC + +E A+W+  GGR  PS
Sbjct: 120 DCSGCKQLIE-AYWNEHGGRPEPS 142


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 371 QSQRNVLIQ*FSQKKTYIIFNNTYLSQIF 457
           ++ ++++   F  KKT+I  N+TY+   F
Sbjct: 145 ENAKDIIAVGFDPKKTFIFMNSTYVGGAF 173


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 356 LIPLSQSQRNVLIQ*FSQKKTYIIFNNTYLSQIFIL*LFF 475
           LIPL   ++N+    F+Q   ++ FN    SQ F+  L F
Sbjct: 707 LIPLVFGKKNLPGTLFAQTFAFVTFNKVCTSQYFMWYLVF 746


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 91  FIDFISVTHTRRYEP*SGRLYLITS 17
           +ID I   HTR   P  G+ YL TS
Sbjct: 227 YIDTIIPLHTRYQSPLKGQTYLKTS 251


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +3

Query: 126 RGSAKAYHRHYAPDGACRPPPDQCALSTPRAQPEHSPLYANWRPFPVARAR 278
           + SA     ++  D     P +   L TP+  P      A   P PV+ +R
Sbjct: 63  KSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPATPIPVSASR 113


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -2

Query: 264 QETASSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSS 85
           +++++++  V   L +  A      PAG  +   A+    TP+ T ART     R + ++
Sbjct: 112 KKSSTTNLSVLGNLVLKVAPSKIRAPAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATT 171

Query: 84  TS 79
            +
Sbjct: 172 NT 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,334
Number of Sequences: 5004
Number of extensions: 39119
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)