Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C16
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 37 0.009
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 33 0.11
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.15
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.34
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.59
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 2.4
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 2.4
SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15) 29 3.1
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 3.1
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8) 29 3.1
SB_6081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) 28 4.1
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 28 5.5
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 5.5
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4) 27 7.2
SB_29262| Best HMM Match : Atracotoxin (HMM E-Value=2.9) 27 7.2
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5) 27 9.6
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 37.1 bits (82), Expect = 0.009
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 14 TACY-EIQSAT--LRFIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPLCAGRCVSPP 184
T C+ E+++ T + +R G+ +SP+ R +V +G P +C P
Sbjct: 96 TKCHMEVEACTESRSMMVARRGECGPCASLRCKSPS---RCQVIKGKPQCVCRDVRECPS 152
Query: 185 A-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
+ PVC+ T TF T C +E +C ES + GEC
Sbjct: 153 SMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 190
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 182 PAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 695 PAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 137 EGVPPPLCAGRCVSPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
+G P +C P + PVC+ T TF T C +E +C ES + GEC
Sbjct: 66 KGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
Score = 31.9 bits (69), Expect = 0.34
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +2
Query: 11 ATACYEIQSATLRFIPSRMGDANEVDEPEMRSPAELVRARVGEGVPPPLCAGRCVSPPAG 190
ATAC + ++ T+ + G V +R P + EG C C PP+G
Sbjct: 1637 ATACQQNRNITV----AHHGACERVSCGNIRCPRFSMCISAQEGGIKCSCPIYC--PPSG 1690
Query: 191 -PVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
PVC D +++ + CEL +C + S G+C
Sbjct: 1691 QPVCGSDG----KSYGSECELRKEACEAKIKLTLVSKGKC 1726
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 107 PAELVRARVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYA 286
P +AR +G P +C G C S PVC D + ++ C L+ SCR++
Sbjct: 5280 PYSYCKAR--DGRPECVCDGIC-SLVYAPVCGTDG----QEYSNECNLQIASCRKNELIE 5332
Query: 287 ITSLGEC 307
+ S G C
Sbjct: 5333 VASRGSC 5339
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 170 CVSPPA--GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
C S P+ PVC D +T+ CEL +C+ + + SL C
Sbjct: 5621 CQSCPSINKPVCGSDG----KTYNNECELRQYACKSDSLITVASLSSC 5664
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 140 GVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
G P +C C S + PVC D +T+ CEL+ +C + S GEC
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 128 RVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSC 265
+V + P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 128 RVGEGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
R +G P +C C S PVC D T+ LC L +C ++T + GEC
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 31.9 bits (69), Expect = 0.34
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 140 GVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
G P +C C A PVC D +T+ C LE SC+ +T ++ G C
Sbjct: 36 GQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 31.9 bits (69), Expect = 0.34
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Frame = -2
Query: 321 NSVNQHSPRLVIA*YVL-SRQETASS---SHRVANVLAVPAASKAHTG--PAGGDTHRPA 160
N + + +VIA ++ S Q+T+ + H V A + H+ P G D RPA
Sbjct: 408 NKMTASNIAIVIAPNIIYSEQDTSDAINLHHTGVQSSIVEALIQHHSWFFPEGVDFFRPA 467
Query: 159 --HSGGGTP---SPTRARTNSAGDRISGSSTSLASPIRDGM 52
+ G +P SPT R SA D + + +P+R+GM
Sbjct: 468 PVSTNGSSPASASPTPPRFESANDASADPGATKQAPVREGM 508
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.1 bits (67), Expect = 0.59
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 158 CAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
C C S A PVC D RT+++ C ++A +C+ T A+ G C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 31.1 bits (67), Expect = 0.59
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 191 PVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
PVC D +T+ CE+ A +C +ST + GEC
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 191 PVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
PVCA +T++ C+++A +C T + S G C
Sbjct: 1606 PVCA----SNGKTYSNRCDMDADACIRDTKLTVVSQGAC 1640
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 176 SPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC*LTEFRXMVSF 340
SP + +C D RT+++ C L SC Y+I +G C + R SF
Sbjct: 226 SPRSTEICGTDG----RTYSSFCALREHSCNVGRLYSIKHIGRCYDKDERVKPSF 276
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/50 (24%), Positives = 18/50 (36%)
Frame = +2
Query: 158 CAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
C C S + P T+ +LC L +C+ + LG C
Sbjct: 127 CVSNCSSCNSSPADTEVCGADGVTYGSLCRLRVATCKLGKTIGVAYLGSC 176
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 170 CVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
C+ P + A T+ + C LE SC+ Y I G+C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 159 APDGACRPPPDQCALSTPRAQPEHSPLYANWR-PFPVARAR 278
AP G PPP +TP P SP WR PF R+R
Sbjct: 746 APPGIYLPPPPAATAATP---PPSSPSGDEWRQPFTARRSR 783
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -2
Query: 252 SSSHRVANVLAVPAASKAHTGPAGGDTHRPA-----HSGGGTP-SPTRARTNSAGDRISG 91
SSS +++ L+ A S H+ P G T A H GGTP SPTR + G +
Sbjct: 455 SSSSSISSHLS--AQSFPHSCPYCGGTSLLASSPGLHREGGTPQSPTRIKCRKCGKNLQL 512
Query: 90 SSTSLASPIR 61
SS+ + P R
Sbjct: 513 SSSGTSLPER 522
>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 147 GTPSPTRA--RTNSAGDRISGSSTSLASPIRDGMNRRVADCIS*QAV 13
G P P +A R ++ G S S++ SP+R ++RR+A S Q V
Sbjct: 302 GKPQPMKALPRVSTLGATRSASASCSKSPVRPMVSRRIASAGSSQGV 348
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 137 EGVPPPLCAGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
+G +C+ C A PVC D T+ LC L A C+ T+ G C
Sbjct: 717 DGKTKCVCSAACTREYA-PVCGSDG----NTYNNLCLLTAARCQSQTFIYRAHFGTC 768
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 CVSPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAITSLGEC 307
C P A P+ GT T+ LC L A SCR + G C
Sbjct: 1307 CPDPAACPLVKSRVCGTDGITYDNLCRLRAESCRRYQPVNVLHSGYC 1353
>SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)
Length = 392
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 183 GGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIR 61
GG+ +R A + + RA S G+RI G + S+A I+
Sbjct: 290 GGEEYRGARTQNANGAVARASRASLGERIKGQNGSIAGIIK 330
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 299 RGS*SRNTCSRDRKRPPVRIEWRM 228
R S SR + RD+ PPVR WRM
Sbjct: 76 RSSSSRPSRGRDKYGPPVRTPWRM 99
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 62 RMGDANEVDEPEMRSPAELVRARVGEGVP-PPLCAGRCVSPPAGPVCAFDAAGTARTFAT 238
R DA V E E + AE + + P C C S A PVC D RT+A+
Sbjct: 173 RSRDARRVRELECQIRAEFLEEENHKYKSLPNRCHEPCPSE-ASPVCGTDM----RTYAS 227
Query: 239 LCELEAVSCR 268
C L+ C+
Sbjct: 228 RCHLQLAKCK 237
>SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)
Length = 450
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 27 RYSRPLYGSYRRVWVTLMKSMNQRCDHQLS*F 122
R+ P Y YRR+ T+ S + DH L F
Sbjct: 182 RHKNPEYDDYRRITTTIKDSSEKESDHGLQEF 213
>SB_6081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 152 PLC-AGRCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
P C V+ PVC D RT+ +E C ++T I S GEC
Sbjct: 6 PTCQCPMAVTADYNPVCGSDG----RTYPNRASMEVQGCLKNTVLKIVSQGEC 54
>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
Length = 1224
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 189 PAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSST 82
P GG+T R +H+ G+ +P T+ + G +T
Sbjct: 1003 PEGGNTPRGSHTHDGSNTPEGGNTHDGSHTLEGGNT 1038
>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 219 VPAASKAHTGPAGGDTHRPAHSGGGTPSP 133
+P +S+ + G D HRPAH G P P
Sbjct: 1382 IPQSSRQYGAQFGRDEHRPAHGRAG-PDP 1409
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = -2
Query: 216 PAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIRDGM 52
P K GP GG R G P P + N G++ +P +DG+
Sbjct: 340 PVGMKGDNGPQGGAGSRGTKGEAGPPGPNGPKGNVGPAGQVGNNGQDGTPGKDGV 394
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 170 CVSP-PA--GPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC 307
CV P PA PVC D +T+ C L A +CR + + GEC
Sbjct: 44 CVRPCPAIYMPVCGTDG----KTYGNKCMLGAATCRSNGTITLAYPGEC 88
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 216 PAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLAS 70
P S H+ + P HS TPS TR++ S G S ++ AS
Sbjct: 180 PVKSPGHSSSSLSSESSPKHSPSATPSTTRSKA-SLGKATSTTNLDSAS 227
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 170 CVSPP--AGPVCAFDAAGTARTFATLCELEAVSCRESTYYAITSLGEC*LTEFR 325
C+S P PVC D + + +C+L +C+ +T + S C TE R
Sbjct: 274 CLSCPNMLDPVCGSDG----KNYDNVCKLRQNACKTNTLITLISRDACPFTEAR 323
>SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4)
Length = 573
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 207 SKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPI 64
SK DT +PAH GG PS T+A T + D S T++ P+
Sbjct: 449 SKTQNSDNSNDT-KPAHDNGGKPS-TQA-TKNQHDSHPDSLTAIEHPV 493
>SB_29262| Best HMM Match : Atracotoxin (HMM E-Value=2.9)
Length = 118
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 167 RCVSPPAGPVCAFDAAGTARTFATLCELEAVSCRE--STYYAITS 295
+C S P+G A TA T+ T + C+ S YY I+S
Sbjct: 71 KCCSWPSGDELELSAETTAVTYTTSLSIGTADCKVVLSAYYKISS 115
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.1 bits (57), Expect = 9.6
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = -2
Query: 252 SSSHRVANVLAVPAASKAHTGPAGGDTHRPA-HSGGGTP--SPTRARTNSAGDRISGSST 82
S S +V+ V SK P+ G S TP SP+ A GD G ST
Sbjct: 3130 SGSDQVSIVDPDTPRSKTKRRPSPGPIESSVKRSEKSTPKRSPSPAAGKQRGDEAKGRST 3189
Query: 81 SLASPIRDGMNRRVAD 34
+ +P R + R A+
Sbjct: 3190 PVQTPRRGSQDNRPAE 3205
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 102 DHQLS*FGRGS-AKAYHRHYAPDGACRPPPDQCALSTPRAQPEHSPLYANWRPFPVAR 272
D QL+ RG AK A + + RP + + + H+PL ++W+P+P R
Sbjct: 124 DIQLARRIRGERAKKVGNFIAGEDSSRPGQENQQQAGHYSDKHHTPLPSDWQPYPGLR 181
>SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)
Length = 208
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 262 GNGLQFA*SGECSGCARGVESAHWSGGGRHAPSG 161
G+G + A SG +G R S H +G GR A SG
Sbjct: 51 GSG-RMAGSGRMAGTGRMAGSGHMAGSGRMAGSG 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,937
Number of Sequences: 59808
Number of extensions: 322194
Number of successful extensions: 1052
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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