Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C16
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb... 32 0.21
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb... 32 0.21
At3g28920.1 68416.m03611 zinc finger homeobox family protein / Z... 31 0.63
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 1.5
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put... 29 2.6
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 28 3.4
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 28 3.4
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 28 3.4
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 28 3.4
At5g64090.1 68418.m08049 expressed protein 28 4.5
At5g47480.1 68418.m05863 expressed protein 28 4.5
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 5.9
At3g20640.1 68416.m02612 ethylene-responsive protein -related co... 27 5.9
At1g22480.1 68414.m02809 plastocyanin-like domain-containing pro... 27 5.9
At1g01540.2 68414.m00071 protein kinase family protein contains ... 27 5.9
At1g01540.1 68414.m00070 protein kinase family protein contains ... 27 5.9
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 27 7.8
>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 140
Score = 32.3 bits (70), Expect = 0.21
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 177 DTHRPAHSGGGTPSPT-RARTNSAGDRISGSSTSLASPIRDGMNRRVADC 31
D RP +GGG P R+R+N G + +T SP D + R++ C
Sbjct: 64 DKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSC 113
>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 145
Score = 32.3 bits (70), Expect = 0.21
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 177 DTHRPAHSGGGTPSPT-RARTNSAGDRISGSSTSLASPIRDGMNRRVADC 31
D RP +GGG P R+R+N G + +T SP D + R++ C
Sbjct: 64 DKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSC 113
>At3g28920.1 68416.m03611 zinc finger homeobox family protein /
ZF-HD homeobox family protein contains Pfam PF04770:
ZF-HD protein dimerisation region; contains Pfam
TIGR01566: ZF-HD homeobox protein Cys/His-rich domain;
contains TIGRFAM TIGR01565: homeobox domain, ZF-HD
class; similar to ZF-HD homeobox protein (GI:13277220)
[Flaveria bidentis]
Length = 312
Score = 30.7 bits (66), Expect = 0.63
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 129 GSAKAYHRHYAPDGACRPPPDQCALSTPRAQPEHSPLYANWRPFPVA 269
G + +HR D + PPP ST A E+ P + + P P+A
Sbjct: 94 GCHRNFHRRETDDSSAVPPPSLLPSSTTTAAIEYQPHHRHHPPPPLA 140
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 306 HSPRLVIA*YVLSRQETASSSHRVANVLA-VPAASKAHTGPAGGDTHRPAHSGGGTPSPT 130
HSP A + S + SH A+ + PA + +H+ PA +H PAHS +P+
Sbjct: 219 HSPSHSPA-HTPSHSPAHTPSHSPAHAPSHSPAHAPSHS-PAHAPSHSPAHSPSHSPATP 276
Query: 129 RARTNSAGDRISGSSTSLASP 67
++ + S+ S ++ S +P
Sbjct: 277 KSPSPSSSPAQSPATPSPMTP 297
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 273 LSRQETASSSHRVANVLA-VPAASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRI 97
+S + S +H ++ A P+ S AH P+ H P+HS PS + A + S
Sbjct: 217 VSHSPSHSPAHTPSHSPAHTPSHSPAHA-PSHSPAHAPSHSPAHAPSHSPAHSPSHSPAT 275
Query: 96 SGSSTSLASP 67
S + +SP
Sbjct: 276 PKSPSPSSSP 285
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -2
Query: 306 HSPRLVIA*YVLSRQETASSSHRVANVLAVPAASKAHTGPAGGDTHRPAHSGGGTPSPTR 127
H+ R + + S + + R A LA PA+ H +GGD H+ + + R
Sbjct: 411 HNQRRLSENFRRSLLSSLVTQQRAARSLAHPASPNEHVLQSGGDNTSQVHNRASSRAGPR 470
Query: 126 ARTNSAGDRISGSSTSLASPIR 61
++ G IS S LAS R
Sbjct: 471 QGQDATG--ISHSLRGLASTSR 490
>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 953
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 337 LQNVVXLNTAFSE-SAECTNTIIFSK 411
LQN+V LN +F+E S E NT+ F K
Sbjct: 646 LQNLVSLNISFNEFSGELPNTLFFRK 671
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 69 VTLMKSMNQRCDHQLS*FGRGSAKAYHRHYAPDGACRPPPD 191
VTL + ++ D + G SA + + + P+G+ +P PD
Sbjct: 70 VTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 69 VTLMKSMNQRCDHQLS*FGRGSAKAYHRHYAPDGACRPPPD 191
VTL + ++ D + G SA + + + P+G+ +P PD
Sbjct: 70 VTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 69 VTLMKSMNQRCDHQLS*FGRGSAKAYHRHYAPDGACRPPPD 191
VTL + ++ D + G SA + + + P+G+ +P PD
Sbjct: 70 VTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 69 VTLMKSMNQRCDHQLS*FGRGSAKAYHRHYAPDGACRPPPD 191
VTL + ++ D + G SA + + + P+G+ +P PD
Sbjct: 70 VTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110
>At5g64090.1 68418.m08049 expressed protein
Length = 448
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 270 SRQETASSSHRVANVLAVPAASKAHTG--PAGGDTHRPAHSGGGTPSPTRARTNSAGDRI 97
S ++S+ HR +V A + A +G P+ P HS + S R+R S +
Sbjct: 15 SSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHSWWESVSKQRSRILSLSSLL 74
Query: 96 SGSS 85
SG S
Sbjct: 75 SGDS 78
>At5g47480.1 68418.m05863 expressed protein
Length = 1350
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 213 AASKAHTGPAGGDTHRPAHSGGGTPSPTRARTNSAGDRI--SGSSTSLASPIRDGMNRRV 40
+ +A G AG A TPSP + + D I SGS TSL + ++RR
Sbjct: 1249 SGDEAVVGSAGAPGPSQASFQSPTPSPIAMQRFPSVDNIRRSGSGTSLNGDLPQSVSRRT 1308
Query: 39 A 37
A
Sbjct: 1309 A 1309
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 180 GDTHRPAHSGGGTPSPTRARTNSAGDRISGSSTSLASPIRDGMNR 46
GD AH TPSPT + ++S+ S S +SP G +R
Sbjct: 955 GDHQGRAHGQSETPSPTSSSSSSSPPFTRRSPLSRSSPETYGTSR 999
>At3g20640.1 68416.m02612 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 454
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -2
Query: 183 GGDTHRPA----HSGGGTPSPTRARTNSAGDRISGSSTSLASP 67
GG+ H+PA S +PSP R GDRI+ + L SP
Sbjct: 322 GGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIA-ALQQLVSP 363
>At1g22480.1 68414.m02809 plastocyanin-like domain-containing
protein
Length = 174
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 225 LAVPAASKAHTGPAGG-DTHRPAHSGGGTPSPT 130
LAV AS + G AGG T P GGG +PT
Sbjct: 109 LAVTVASNSSNGVAGGTTTPTPFTGGGGGYNPT 141
>At1g01540.2 68414.m00071 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 472
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 238 SGECSGCARGVESAHWSGGGRHAP--SGA*W-RWYAFAD 131
SGE G A E+A +SG G P S W RWY +
Sbjct: 108 SGESRGTASASETASYSGSGNCGPEVSHLGWGRWYTLRE 146
>At1g01540.1 68414.m00070 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 386
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 238 SGECSGCARGVESAHWSGGGRHAP--SGA*W-RWYAFAD 131
SGE G A E+A +SG G P S W RWY +
Sbjct: 108 SGESRGTASASETASYSGSGNCGPEVSHLGWGRWYTLRE 146
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 201 AHTGPAGGDTHRPAHSGGGTPSP 133
+++G +G T+ + SGGG+PSP
Sbjct: 386 SNSGGSGNGTNSTSTSGGGSPSP 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,497,775
Number of Sequences: 28952
Number of extensions: 220843
Number of successful extensions: 727
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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