Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C14
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    30   0.21 
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.37 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.49 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   0.49 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   1.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   3.5  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    25   6.1  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   8.0  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 372 LTRVKMSQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 551
           +T  K+  P+ERS   Q      + T    Q +P   +S++ ++ T+SKHS  I +  T+
Sbjct: 433 VTIPKILSPHERSLLEQLADALNDSTARRTQSSPSGTNSSTSTSSTSSKHSTGISTEPTT 492


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 263 KIITFLAYLEGPVLDTMLPK-GKGTILHSFVMATDKSLNARENVAAIRALEQATMRIARE 439
           K+ + L Y++  VLD  LPK G    LHSF++  D SLN    ++A++   +  +R+   
Sbjct: 47  KLDSELGYVK-QVLDETLPKKGYEKALHSFIIHEDPSLN---YISALKETAKERIRVTVP 102

Query: 440 KRYQGVFATNTSPLT 484
                     T P+T
Sbjct: 103 VYSSRKSYVQTKPIT 117


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 444 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 560
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 444 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 560
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 173 VLIEKGALIAVALNLDARDEPEIKLTGGSAKIITFLAY----LEGPVLDTMLPKGKGTIL 340
           +++ KG +I    N  A D+  +    GS  +I  L      +EG V+ T + KG+  IL
Sbjct: 417 MVMYKGPVITFITNYGAVDKEYLIKMPGSETMIDLLTCTLIEVEGEVMRTSIKKGEPKIL 476

Query: 341 HSFVMA 358
           + + +A
Sbjct: 477 YPYQLA 482


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 390 SQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPST 503
           SQ   R+N+ +   RA + +RE +  +P+   ++SP +
Sbjct: 4   SQQSGRANELRTPGRANSSSREAVDSSPLFFPASSPGS 41


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 478 SYTATRHRHSRLRSTLGLSNQSVRRLKRREDL 573
           S+  T  +H+R + ++  + +S +RLKR+ DL
Sbjct: 25  SFDPTLFQHARRKLSVDSTKKSPKRLKRQVDL 56


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 347 MNEELYPCLWGASYLAQVLLNTP 279
           +++E  P +WG ++L  +L+N P
Sbjct: 163 ISKETKPSVWGDNFLRIILINLP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,364
Number of Sequences: 5004
Number of extensions: 50039
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)