Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C14
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0087 + 18970741-18972702 31 0.50
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 29 2.0
07_03_0839 + 21916842-21917852,21917944-21919602 29 3.5
11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928,208... 28 4.7
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 28 6.2
10_05_0072 + 8839223-8839720 28 6.2
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 27 8.2
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 27 8.2
04_04_1119 + 31034136-31034385,31035360-31035508 27 8.2
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 8.2
>11_05_0087 + 18970741-18972702
Length = 653
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 154 ISTLTHNPIYIITHNHPVMVAGIRWMRVAQYRSLWRSLGGV-LAVTATRLD 5
IS L + I I H P A + +++RSLWRS G V LAV R D
Sbjct: 101 ISDLPDDLIQRILHFAPAREAASTGLLSSRWRSLWRSTGAVNLAVLVRRRD 151
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +1
Query: 310 DAPQRQGYNSSFIRNGDGQVP*RA*KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTA 489
+ P G + S R +G A CR H S RT + + G NKH+ A
Sbjct: 612 ERPYSSGRHGSSGRMEEGTA---APSCR-HRSRRTDKRPSSSGRHGSGRTANKHERPAPA 667
Query: 490 TRHRHSRLRSTLGL 531
TR R R R L L
Sbjct: 668 TRPRQRRKRKYLYL 681
>07_03_0839 + 21916842-21917852,21917944-21919602
Length = 889
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 107 VIMGYYIYGIMGECAYNNNILFVLIEKGALIAVALNLDARDEP-EIKLTGGSAKIITFLA 283
V++ + G+MG+ +LFV + A+ AVA A P + +L+GG+A + A
Sbjct: 824 VLLYPFALGVMGQWGKRPAVLFVAMAM-AVAAVAAMYVAFGAPYQAELSGGAASLGKAAA 882
Query: 284 YLEGP 298
L GP
Sbjct: 883 SLTGP 887
>11_01_0280 +
2080527-2080673,2081585-2081677,2081767-2081928,
2082375-2082506,2083136-2083170,2083769-2083868,
2083990-2084283
Length = 320
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 455 LPGNVSRARFALSLVRALVWLRHFHAR*GTC 363
L G + R F +SL+R VWLR R G C
Sbjct: 245 LGGFLPRPVFPISLLRQEVWLRRLRRRRGGC 275
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 402 ERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTAS 515
ER NK + VT +Q TP++ H SPS +S
Sbjct: 348 ERVNKVLADMNIPRVTTPAVQPTPLVQHDASPSQHRSS 385
>10_05_0072 + 8839223-8839720
Length = 165
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +2
Query: 353 MATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAIDIHGFEALLDY 532
MA + + + +A+ + + +ATM + ++K +GV + L + L D
Sbjct: 1 MAEENKSGSGDLMASGKVVAEATMSVFQQKSVEGVDKKEVAGAAADLLHSASTYGKLDDK 60
Query: 533 QINQYVD 553
+ QY+D
Sbjct: 61 PVGQYID 67
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 200 AVALNLDARDEPEIKLTGGSAKIITFLAYLEGPVLDTM 313
AV L ++A ++PEI G + F+ EG +DT+
Sbjct: 52 AVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTL 89
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 474 VLLHSNSPSTFTASKHSWTIKSISTSTQ--TARGSLA 578
+ LHSN FTA+K T+ + ST+ R SLA
Sbjct: 455 IALHSNDGGPFTANKRIRTVPQFNASTEFGVGRTSLA 491
>04_04_1119 + 31034136-31034385,31035360-31035508
Length = 132
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 267 ILADPPVSLISGSSRASKFNATAMSAP 187
+ A PP S SG SRA+ +A+AM P
Sbjct: 47 VRAPPPPSKDSGGSRAASSSASAMGEP 73
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 385 KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRR 564
+C H+S+R+ ++ +RE G ++H+S + + + L + S RR +
Sbjct: 824 RCSRHSSSRSHRSSRHSREKYHGDTTDQHKSKKSEEGSKSRKDDCLLDDTLSSDRRKVQS 883
Query: 565 ED 570
ED
Sbjct: 884 ED 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,678,593
Number of Sequences: 37544
Number of extensions: 355013
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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