Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C14
         (579 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005167-1|AAH05167.1|  442|Homo sapiens zinc finger protein 773...    31   3.9  
AK057209-1|BAB71382.1|  441|Homo sapiens protein ( Homo sapiens ...    31   3.9  
L03426-1|AAA61304.1|  695|Homo sapiens XE7 protein.                    30   6.8  
BC110497-1|AAI10498.1|  695|Homo sapiens splicing factor, argini...    30   6.8  
BC110496-1|AAI10497.1|  695|Homo sapiens splicing factor, argini...    30   6.8  
AL683807-2|CAI41501.1|  695|Homo sapiens chromosome X and Y open...    30   6.8  
AK127513-1|BAC87014.1|  123|Homo sapiens hondrocyte-derived) (FA...    29   9.0  
AB065462-1|BAC05721.1|  964|Homo sapiens seven transmembrane hel...    29   9.0  

>BC005167-1|AAH05167.1|  442|Homo sapiens zinc finger protein 773
           protein.
          Length = 442

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 319 QRQGYNSSFIRNGDGQVP*RA*KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTATR- 495
           Q+Q      ++  +G+VP     CR H S ++  +    ++ L  S   KHQ ++T  + 
Sbjct: 116 QKQHCGEKPLKRQEGRVPVLR-SCRVHLSEKSLQSREVGKDLLTSSGVLKHQVTHTGEKS 174

Query: 496 HRHSRLR 516
           HR S+ R
Sbjct: 175 HRSSKSR 181


>AK057209-1|BAB71382.1|  441|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32647 fis, clone SYNOV2001374, moderately
           similar to ZINC FINGER PROTEIN 134. ).
          Length = 441

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 319 QRQGYNSSFIRNGDGQVP*RA*KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTATR- 495
           Q+Q      ++  +G+VP     CR H S ++  +    ++ L  S   KHQ ++T  + 
Sbjct: 115 QKQHCGEKPLKRQEGRVPVLR-SCRVHLSEKSLQSREVGKDLLTSSGVLKHQVTHTGEKS 173

Query: 496 HRHSRLR 516
           HR S+ R
Sbjct: 174 HRSSKSR 180


>L03426-1|AAA61304.1|  695|Homo sapiens XE7 protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 391 RSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRRED 570
           R H      D++ R R T P     + + S++  RHR  R R   G +++   R +RR +
Sbjct: 622 RPHKKHAYKDDSPRRRSTSPDHT--RSRRSHSKDRHRRERSRERRGSASRKHSRHRRRSE 679


>BC110497-1|AAI10498.1|  695|Homo sapiens splicing factor,
           arginine/serine-rich 17A protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 391 RSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRRED 570
           R H      D++ R R T P     + + S++  RHR  R R   G +++   R +RR +
Sbjct: 622 RPHKKHAYKDDSPRRRSTSPDHT--RSRRSHSKDRHRRERSRERRGSASRKHSRHRRRSE 679


>BC110496-1|AAI10497.1|  695|Homo sapiens splicing factor,
           arginine/serine-rich 17A protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 391 RSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRRED 570
           R H      D++ R R T P     + + S++  RHR  R R   G +++   R +RR +
Sbjct: 622 RPHKKHAYKDDSPRRRSTSPDHT--RSRRSHSKDRHRRERSRERRGSASRKHSRHRRRSE 679


>AL683807-2|CAI41501.1|  695|Homo sapiens chromosome X and Y open
           reading frame 3 protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 391 RSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRRED 570
           R H      D++ R R T P     + + S++  RHR  R R   G +++   R +RR +
Sbjct: 622 RPHKKHAYKDDSPRRRSTSPDHT--RSRRSHSKDRHRRERSRERRGSASRKHSRHRRRSE 679


>AK127513-1|BAC87014.1|  123|Homo sapiens hondrocyte-derived)
           (FARP1).  protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 266 IITFLAYLEGPVLDTMLPKGKGTILHSFVMATDKSLNARE 385
           I  FL+YL  P+L+  LP GKG I+   +    KS++  +
Sbjct: 33  IYVFLSYLS-PMLECKLPSGKGPIVLYLLSPVTKSVSGAQ 71


>AB065462-1|BAC05721.1|  964|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 420 QCESRARNVTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGS 572
           QCE R + V +   Q T ++    SP++   S   WT  S S   +  + S
Sbjct: 206 QCEKRLKEVLQRPAQLTAIITTLVSPASIMESDKGWTSASTSGKPRKDKAS 256


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,443,746
Number of Sequences: 237096
Number of extensions: 1906215
Number of successful extensions: 4855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4855
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)