Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C14
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 33 0.15
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 31 0.59
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 31 0.59
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 31 0.59
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 31 0.78
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 31 0.78
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 31 0.78
AF014940-2|AAB63934.1| 232|Caenorhabditis elegans Hypothetical ... 31 0.78
AF014940-3|AAB63935.2| 232|Caenorhabditis elegans Hypothetical ... 29 2.4
AF106575-16|AAC78161.2| 334|Caenorhabditis elegans Serpentine r... 28 5.5
Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical pr... 27 9.6
U97190-2|AAL50320.1| 42|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 339 RIVPLPLGSIVSSTGPSKYAKNVIILADPPVSLISGSSRASKFNATA 199
RI PL +I + S+ A ++I LA PP + S S +++NA A
Sbjct: 1091 RITGAPLNAIEDAARTSRQALSLIALARPPALITSLSMEVARYNAAA 1137
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 330 PLPLGSIVSSTGPSKYAKNVIILADP-PVSLISGSSRASKFNA 205
P+P + SS GPS Y + +++LA P S S S A+ A
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQA 796
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 330 PLPLGSIVSSTGPSKYAKNVIILADP-PVSLISGSSRASKFNA 205
P+P + SS GPS Y + +++LA P S S S A+ A
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQA 796
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 330 PLPLGSIVSSTGPSKYAKNVIILADP-PVSLISGSSRASKFNA 205
P+P + SS GPS Y + +++LA P S S S A+ A
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQA 796
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 330 PLPLGSIVSSTGPSKYAKNVIILADP-PVSLISGSSRASKFNA 205
P+P + SS GPS Y + +++LA P S S S A+ A
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQA 796
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 330 PLPLGSIVSSTGPSKYAKNVIILADP-PVSLISGSSRASKFNA 205
P+P + SS GPS Y + +++LA P S S S A+ A
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQA 796
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 378 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 551
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 552 TQTAR 566
TQ R
Sbjct: 722 TQGCR 726
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 378 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 551
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 552 TQTAR 566
TQ R
Sbjct: 722 TQGCR 726
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 378 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 551
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 552 TQTAR 566
TQ R
Sbjct: 722 TQGCR 726
>AF014940-2|AAB63934.1| 232|Caenorhabditis elegans Hypothetical
protein W02D7.4 protein.
Length = 232
Score = 30.7 bits (66), Expect = 0.78
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Frame = +2
Query: 173 VLIEKGALIAVAL-----NLDARDEPEIKLTGGSAKIITFLAYLEGPVLD--TMLPKGKG 331
VL E G L A L D + + TG F+ +L L+ + P
Sbjct: 70 VLQENGDLAACLLASVWNRTDPLENADFDDTGLPENFKLFIQFLNKAHLNFWKIAPPNVN 129
Query: 332 TILHSFVMATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAIDIHG 511
+I+H + + R +A T R ++ GV + TS L Q+ ++ G
Sbjct: 130 SIIHREIGSVAPQFT-RLGIATKMVTTNMTKRNLKKYNIGGVLSETTS-LANQIVLEKAG 187
Query: 512 FEALLDYQINQYVDSNGERI 571
F+ L + + VDS G ++
Sbjct: 188 FKCLKELPYSTIVDSKGNQV 207
>AF014940-3|AAB63935.2| 232|Caenorhabditis elegans Hypothetical
protein W02D7.5 protein.
Length = 232
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 440 KRYQ-GVFATNTSPLTQQLAIDIHGFEALLDYQINQYVDSNGERI 571
K+Y G + TS L Q+ + GF+ L + + VDS G R+
Sbjct: 163 KKYNIGGVLSETSSLANQIVLQKAGFKCLKELPYSAIVDSKGNRV 207
>AF106575-16|AAC78161.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein3 protein.
Length = 334
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = -1
Query: 399 MAATFSRALRDLSVAITNE*RIVPLPLGSIVSSTGPSKYAKNVIILADPPVSLISGSSRA 220
MA FS L D+ + + + IV LP+ + S+T S+YA NV L P +G+S
Sbjct: 52 MAHIFSGFLLDIVMGVLWKVTIV-LPVPVMCSNTFASEYAPNVFQLL-PACFAYTGASAI 109
Query: 219 SKF 211
S F
Sbjct: 110 SLF 112
>Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical
protein R05H10.1 protein.
Length = 250
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 422 MRIAREKRYQGVFATNTSPLTQQLAIDIHGFEALLDYQINQYVDSNGERI 571
M AR G+ + TS Q + +GF+ L ++ + V SNG+++
Sbjct: 158 MSAARLHNVDGIVSA-TSSFANQTLLAKNGFQCLKEFPYSGIVSSNGDKL 206
>U97190-2|AAL50320.1| 42|Caenorhabditis elegans Hypothetical
protein B0025.4 protein.
Length = 42
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 166 NIVIISTLT--HNPIYIITHNHPVMVAGIRWMRVAQYRSL 53
N++I+ + HNP+ T NH + V I ++R++QY L
Sbjct: 2 NLIIMMKMIRRHNPVE--TQNHLLNVESIDYLRISQYIDL 39
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 37 PPKISTKTGIAPPASSGFPRP*P 105
PP ST T PP+SS P P P
Sbjct: 170 PPPSSTPTPTPPPSSSSSPTPTP 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,626
Number of Sequences: 27780
Number of extensions: 293091
Number of successful extensions: 812
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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