Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C14
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    29   1.7  
At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein           28   3.9  
At5g64520.2 68418.m08107 DNA repair protein-related contains wea...    28   5.2  
At5g64520.1 68418.m08106 DNA repair protein-related contains wea...    28   5.2  
At5g56630.1 68418.m07070 phosphofructokinase family protein simi...    27   6.8  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   6.8  
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea...    27   6.8  
At2g26840.1 68415.m03220 expressed protein                             27   9.0  
At2g01170.2 68415.m00025 amino acid permease family protein weak...    27   9.0  
At2g01170.1 68415.m00026 amino acid permease family protein weak...    27   9.0  

>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +2

Query: 278 LAYLEGPVLDTMLPKGKGTILHSFVMATDKSLNARENVAAIRALEQATMRIAREK----R 445
           +AYL     DTM  +G G  +  F+   ++      +      L  ATM +A +K     
Sbjct: 264 IAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEE 323

Query: 446 YQGVFATNTSPLTQQLAIDIHGF 514
           +QG+    TS L +++A   H F
Sbjct: 324 FQGIEHLRTSTLHKKIANARHDF 346


>At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein
          Length = 774

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 420 VACSSARMAATF-SRALRDLSVAITNE*RIVPLPLGSIVSSTGPSKYAKNVIILADPPVS 244
           V+ S+   A T  + +   + V+ TN      +PL   VS+TG       V + A+PP++
Sbjct: 645 VSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPIN 704

Query: 243 LISG 232
            I G
Sbjct: 705 GIKG 708


>At5g64520.2 68418.m08107 DNA repair protein-related contains weak
           similarity to DNA-repair protein XRCC2 (X-ray repair
           cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
           sapiens]
          Length = 342

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 384 SRALRDLSVAITNE*RIVPLPLGSIVSSTGPSKYAKNVIIL 262
           SR L+D +  +      VPL  G++V  TG S  AK  I++
Sbjct: 21  SRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI 61


>At5g64520.1 68418.m08106 DNA repair protein-related contains weak
           similarity to DNA-repair protein XRCC2 (X-ray repair
           cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
           sapiens]
          Length = 372

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 384 SRALRDLSVAITNE*RIVPLPLGSIVSSTGPSKYAKNVIIL 262
           SR L+D +  +      VPL  G++V  TG S  AK  I++
Sbjct: 21  SRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI 61


>At5g56630.1 68418.m07070 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 485

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 380 RENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAIDIH 508
           RE V+++  +      +  +  Y+G +A NT PL  ++  DIH
Sbjct: 111 REVVSSLSYMYGVKRILGIDGGYRGFYAKNTIPLNSKVVNDIH 153


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 514 EAVNVDGELL--CKRTGVCCKHSLVTFLARD 428
           + V++D E+L  C + G+CCK   V F+ ++
Sbjct: 132 QEVSIDDEVLFFCGKEGLCCKDGRVGFVVQE 162


>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           myosin heavy chain kinase B (SP:P90648)(GI:1903458)
           [Dictyostelium discoideum]
          Length = 415

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 403 SARTSDNANRARETLPGS--VCNKH--QSSYTATRHRHSRL 513
           S R S+NA R  +TLP +     K   QS+Y  TR  H RL
Sbjct: 129 SRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRL 169


>At2g26840.1 68415.m03220 expressed protein 
          Length = 273

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 449 GNVSRARFALSLVRALVWLRHFHAR*GTC--PSPLRMNEELYPCL 321
           G +  + F +  V A +W RHF    G+C      R+  EL+P L
Sbjct: 177 GTLVASGFCVIPVSASLWKRHFQLASGSCTKDDSRRVAAELFPSL 221


>At2g01170.2 68415.m00025 amino acid permease family protein weak
           similarity to GABA permease [Emericella nidulans]
           GI:4972245; contains Pfam profile PF00324: Amino acid
           permease
          Length = 437

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 100 MVAGIRWMRVAQYRSLWRSLGGVLAVTAT 14
           M+AG RW  +A + + W ++ G  AVTA+
Sbjct: 26  MLAGPRWAPLASWMTGWFNIVGQWAVTAS 54


>At2g01170.1 68415.m00026 amino acid permease family protein weak
           similarity to GABA permease [Emericella nidulans]
           GI:4972245; contains Pfam profile PF00324: Amino acid
           permease
          Length = 516

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 100 MVAGIRWMRVAQYRSLWRSLGGVLAVTAT 14
           M+AG RW  +A + + W ++ G  AVTA+
Sbjct: 105 MLAGPRWAPLASWMTGWFNIVGQWAVTAS 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,699
Number of Sequences: 28952
Number of extensions: 273277
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)