Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    31   0.19 
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   5.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   9.3  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 397 IGWLARLVMQSEVRAGTLLTLLQCLHVDPTPQ-----DIFEHIARNCLNSAQSV 251
           +G++ + +   E+R   L+ LL C+     P      +IFE++ ++CL S   V
Sbjct: 618 VGYVTQRIEDIELRISYLMRLLNCILAQLQPSLYPNLEIFENVLKSCLQSVAGV 671


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 303 RTYSNTSPATASTAHSQYCLYMS 235
           +T+ N    + STAHSQ  L MS
Sbjct: 225 KTFGNLKEISGSTAHSQLILLMS 247


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 240 YRDSTDCALLRQLRAMCSNMSCGVGS 317
           YR S  C L     AMCSN  C V S
Sbjct: 64  YRSS--CPLWENDNAMCSNQGCAVKS 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,991
Number of Sequences: 5004
Number of extensions: 51897
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)