Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329...    30   1.8  
07_01_0672 - 5041742-5043175                                           28   7.3  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   7.3  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           27   9.7  
04_01_0330 - 4369326-4370852                                           27   9.7  

>05_01_0418 -
           3288844-3288990,3289256-3289332,3289578-3289653,
           3290125-3290220,3290307-3290376,3290474-3290564,
           3290753-3290822,3290908-3291044,3291313-3291465,
           3291816-3291864,3292205-3292366
          Length = 375

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 229 SIGHIET-VLTVRC*GSCGRCVRICP 303
           S G +E  V+T RC G CGRC+ +CP
Sbjct: 162 SCGKLEGGVITERCYG-CGRCLSVCP 186


>07_01_0672 - 5041742-5043175
          Length = 477

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 340 TLLQCLHVDPTPQDIFEHIARNCLNSA 260
           +LLQ   +  TP D+ EH+ R C  +A
Sbjct: 417 SLLQDARIKITPADVAEHLMRKCATAA 443


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 372 CSRRCGPARCSPCCSVCTWTQRRRTYSNTSP 280
           C RRC    C+PC  VC    R   +   SP
Sbjct: 427 CRRRCCEGDCAPCPEVCDKRLRCGNHKCLSP 457


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 284 RPQLPQQRTVSTVSICPILSI 222
           RP+L Q + VS VS+ PI+SI
Sbjct: 186 RPRLAQAKFVSNVSVLPIVSI 206


>04_01_0330 - 4369326-4370852
          Length = 508

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 350 AGPHLRLHHEAG*PPDDVIATPATLLYTTT 439
           AGP +R+ H  G PP        T LYT T
Sbjct: 164 AGPFMRVRHGGGPPPPPPEQLIGTSLYTVT 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,304
Number of Sequences: 37544
Number of extensions: 326963
Number of successful extensions: 799
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)