Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       30   1.4  
SB_19374| Best HMM Match : Phage_integrase (HMM E-Value=4.3)           29   3.2  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    29   3.2  
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                29   3.2  
SB_26996| Best HMM Match : ASC (HMM E-Value=4.3e-08)                   28   7.5  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       28   7.5  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   9.9  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = -1

Query: 263 RTVSTVSICPILSITSLNIIVMEKITKIASINRITKNEKDFRFSSSFQIE 114
           RT +    C ++  +SLN+I + ++ + +SI   +K  KD+R+S+   +E
Sbjct: 725 RTPAEQGACSVVR-SSLNMIDIRRVRRQSSIRSCSKLAKDYRYSTLTPVE 773


>SB_19374| Best HMM Match : Phage_integrase (HMM E-Value=4.3)
          Length = 275

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 354 PARCSPCCSVCTWTQRRRTYSNTSPATAST 265
           PAR S   +   WT R++T S T P T  T
Sbjct: 96  PARFSTHSTTAPWTTRQKTGSTTQPTTQPT 125


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 263 RTVSTVSICPILSITSLNIIVMEKITKIASINRITKNEKDFRFSS 129
           RT +    C ++  +SLN+I + ++ + +SI   +K  KD+R+S+
Sbjct: 336 RTPAEQGACSVVR-SSLNMIDIRRVRRQSSIRSCSKLAKDYRYST 379


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 311 NAAGHIRTHRPQLPQQRTVSTVSICPILSITSLNI 207
           N   +I  H P L Q+    T + CP+LSI + ++
Sbjct: 227 NWQDYINRHDPVLGQENCYETANFCPLLSIFTFSL 261


>SB_26996| Best HMM Match : ASC (HMM E-Value=4.3e-08)
          Length = 399

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 276 LRAMCSNMSCGVGSTCRHCSRVSSVPARTSDCITRRANHPMTSSRRP 416
           +R +  N++CG    C + +  SSV     D I  R    + SS RP
Sbjct: 112 IRGVSGNLTCGQALLCAYETFGSSVVDGCDDVIRSRVIAAVNSSNRP 158


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 351  ARCSPCCSVCTWTQRRRTYSNTSPATASTAHSQYCLYMSNTFNH 220
            A+C+   ++ +W +    Y  +S     +  S  CLY+ N   H
Sbjct: 2493 AKCADSFTISSWVKMASNYPLSSQPIVCSLDSTLCLYLENRRIH 2536


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
 Frame = -3

Query: 384  PAS*CSRRCGPARCSP-----CCSVCTWTQRRRTYSNTSPATASTA 262
            P S C   C P  C P     CCSVC      ++  N  P    T+
Sbjct: 1665 PLSACPATCSPDSCRPECPLICCSVCPPNCSAQSCGNFCPPKCCTS 1710


>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 360 CGPARC---SPCCSVCTWTQRRRTYSN 289
           CGP      SPC + CT   R RTY+N
Sbjct: 655 CGPGGLNYFSPCFAGCTTMTRNRTYTN 681


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 345 CSPCCSVCTWTQRRRTYSNTSPATASTAHSQYCLYMSNTFN 223
           C  CC  CT T    T + T+  TA+TA +      + T N
Sbjct: 515 CYYCCCSCTATTATATTTATATTTATTAATATTTTTTTTTN 555


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 372  CSRRCGPARCSPCCSVCTWTQR 307
            C  RCG   C PC   C W  R
Sbjct: 1959 CKNRCGEP-CVPCAEPCAWECR 1979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,549
Number of Sequences: 59808
Number of extensions: 395419
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)