Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    33   0.23 
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    28   6.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 345 CSPCCSVCTWTQRRRTYS-NTSPATASTAHSQYCLYMSNTFNHIFKYYCDGKN 190
           C   C + T T  R +   + +PA    + S YC ++S  FN I  + C+  +
Sbjct: 58  CPVICPLNTTTDTRYSCDPDAAPALKCPSDSHYCYFLSGNFNKIQNFICNANS 110


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = -3

Query: 384 PAS*CSRRC--GPARCSPCCSVCTWTQRRRTYSNTSPATASTAHSQYCLYMSNTFNHIF- 214
           PA   S  C  G A CS CCS+C  T+   T          T+    C+ +     +   
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLA 67

Query: 213 --KYYCDGKN 190
             K++C+G N
Sbjct: 68  ENKWFCEGLN 77


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = -3

Query: 384 PAS*CSRRC--GPARCSPCCSVCTWTQRRRTYSNTSPATASTAHSQYCLYMSNTFNHIF- 214
           PA   S  C  G A CS CCS+C  T+   T          T+    C+ +     +   
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLA 67

Query: 213 --KYYCDGKN 190
             K++C+G N
Sbjct: 68  ENKWFCEGLN 77


>Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical
           protein F26F2.8 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 249 STDCALLRQLRAMCSNMSCGVGSTCRHCSRVSSVPARTSDCITRRANHPMTSSRRPRLFS 428
           S DC     +    S   CG G  C   ++  +     S    R   + M +   P +F 
Sbjct: 50  SDDCNGSTNIIKDRSTDDCGPGGMCMKWTQAVNNSGTMSWMTFRGCYNKMFNLNDPSVFK 109

Query: 429 IPLHT*CTHS 458
            P H+ CTHS
Sbjct: 110 PPNHSFCTHS 119


>Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical
           protein F28C12.6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 287 HRPQLPQQRTVSTVSICPILSITSLNIIVMEKITKIASINRITKNEKD 144
           HR Q   QR +    I  I+ +  + +I+ +  T +++I+ ITK EKD
Sbjct: 182 HRRQT--QRIIKPKHIFRIIFLIIIIVIINKAFTLLSTIDDITKKEKD 227


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
            protein Y57A10A.31 protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 258  CALLRQLRAMCSNMSCGVGSTCRHCSRVSSVPARTSDC 371
            CA+L + R  C++M CG G+   +C     V   + DC
Sbjct: 976  CAVLVEKREGCNHMQCGCGT--HYCWTCLYVAESSGDC 1011


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 294 NMSCGVG-STCRHCSRVSSVPARTSD 368
           N SC  G S CRHC++V   P +  D
Sbjct: 591 NRSCPCGYSWCRHCNKVPHWPLKCGD 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,029
Number of Sequences: 27780
Number of extensions: 295819
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)