Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.83 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 166 G*LRMKKISDSLLHFKSN*LGRPTIS 89
           G L +  ++D++L +K   LG+PTIS
Sbjct: 724 GQLLLDYLTDTVLAYKPKILGKPTIS 749


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 315 TQRRRTYSNTSPATASTAHSQYCLYMSNTFNHIFKYYCDGK 193
           T++R T  NT+        S   +  +  F  + K  CDGK
Sbjct: 456 TEKRLTKQNTAFENQLQFVSDAVMAFAYAFRDMHKELCDGK 496


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +2

Query: 512  SLLSNDTXXXXXXXXXXXXTKVRYQMLHIICDYSKASNFYFSAL 643
            S +SND              K  Y+    I D S +S+FY S L
Sbjct: 920  SCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFL 963


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 338 GEQRAGPHLRLHH 376
           G+Q   PH +LHH
Sbjct: 804 GDQSQPPHQQLHH 816


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,902
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)