Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C13
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    31   0.87 
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    30   1.1  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    30   1.1  
At4g11890.3 68417.m01892 protein kinase family protein contains ...    28   6.1  
At4g11890.2 68417.m01891 protein kinase family protein contains ...    28   6.1  
At4g11890.1 68417.m01890 protein kinase family protein contains ...    28   6.1  
At2g15350.1 68415.m01756 xyloglucan fucosyltransferase, putative...    27   8.1  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 372 CSRRCGPARCSPCCSVCTWTQRRRTYSNTSP 280
           C RRC    C PC  +C    R R +   SP
Sbjct: 415 CRRRCCDGECPPCSEICGKKLRCRNHKCQSP 445


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1329

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 151 SFLVIRLMEAIFVIFSITIIFKDVIESIGHIETVLTVRC 267
           SFLV+  +E   V+ S+ + FKDV +S+G    V T  C
Sbjct: 480 SFLVLSFVEETRVL-SVGLSFKDVTDSVGFQSDVCTFAC 517


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 151 SFLVIRLMEAIFVIFSITIIFKDVIESIGHIETVLTVRC 267
           SFLV+  +E   V+ S+ + FKDV +S+G    V T  C
Sbjct: 538 SFLVLSFVEETRVL-SVGLSFKDVTDSVGFQSDVCTFAC 575


>At4g11890.3 68417.m01892 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 354

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +1

Query: 64  GNSLIHYVRRSW-----VDPVSSI*NEEENRKSFS 153
           G+SLI YVRR W     +D +  +  EEE   S S
Sbjct: 246 GDSLIKYVRRCWNRGEAIDVIHEVMREEEREYSIS 280


>At4g11890.2 68417.m01891 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 352

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +1

Query: 64  GNSLIHYVRRSW-----VDPVSSI*NEEENRKSFS 153
           G+SLI YVRR W     +D +  +  EEE   S S
Sbjct: 244 GDSLIKYVRRCWNRGEAIDVIHEVMREEEREYSIS 278


>At4g11890.1 68417.m01890 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +1

Query: 64  GNSLIHYVRRSW-----VDPVSSI*NEEENRKSFS 153
           G+SLI YVRR W     +D +  +  EEE   S S
Sbjct: 243 GDSLIKYVRRCWNRGEAIDVIHEVMREEEREYSIS 277


>At2g15350.1 68415.m01756 xyloglucan fucosyltransferase, putative
           (FUT10) identical to SP|Q9SJP6 Putative
           fucosyltransferase 10 (EC 2.4.1.-) (AtFUT10) (Fragment)
           {Arabidopsis thaliana}; similar to xyloglucan
           fucosyltransferase GI:5231145 from [Arabidopsis
           thaliana]
          Length = 440

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 313 PTPQDIFEHIARNCLNSAQSVLSLYVQYFQSHL 215
           P  + +F H+AR   +    V  +  +Y+ +HL
Sbjct: 201 PQKETVFHHLARYLFHPTNEVWDMVTKYYDAHL 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,741
Number of Sequences: 28952
Number of extensions: 268683
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)