Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C11
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.37
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.64
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.85
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 2.6
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 3.4
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 4.5
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 6.0
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 7.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.9
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.37
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 204 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 91
CI GF ++ + +RTR + PS +LS T V+ FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.64
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 204 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 91
CI GF ++ + +RTR + PS +LS + V+ FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.85
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -2
Query: 371 GSAVRKSVQCS---PPLWGYVQVYNSQMP 294
G ++ KS CS PPL G+V V+N Q P
Sbjct: 257 GKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 314 PERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPYPQTCPWVSAPLD 469
PE + EA P P + +D+ ++ Q+G P T SAP +
Sbjct: 631 PESSTNEATSVGPALEPSQGANVHKSDSELDNQNQSGKSNPDTSATPSAPTE 682
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 2.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 122 DKESEHREG---FTALVRE--MKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIV 286
D ES H EG F + E MK+ALN ++ +S ++ I FD I D V
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044
Query: 287 NIQAFDYY 310
++Y
Sbjct: 1045 EDILTEFY 1052
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 286 DNVDQVYDAWDVKVNGAIYVWQ 221
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 340 LHCTDLRTAEPGSSTKR 390
+HC D+ T PGSS R
Sbjct: 62 VHCLDIPTVRPGSSMSR 78
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 245 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 340
Y D P I+ V +N+ D T + NP + D
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 155 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 274
AL+R A++ K S LP+++ I+ PSI N+
Sbjct: 2 ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 305 YYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPYPQTCPWVSAPL 466
Y TP Y P Y P R+P Q+ A + NG P V +P+
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVAPS---PNGTPTSGNSSTVGSPM 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,187
Number of Sequences: 5004
Number of extensions: 41025
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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