Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C11
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.21
12_02_0239 - 16125105-16126025,16126966-16127415 31 0.64
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 2.0
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 2.0
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 3.4
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 3.4
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 28 4.5
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 28 4.5
07_03_1383 + 26172329-26172448,26172770-26172961 27 6.0
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 27 6.0
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859... 27 7.9
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 158 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 283
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 68 IGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 247
+G + + + T V + + E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 248 FDVPSIINLVDI 283
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 158 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 283
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 PKEADYTAPIYAPQNRDPLQNADAAI-NYWIQNGAPYPQTCPWV 454
P+ D + PIY P PL+N A+ N Q AP + P V
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAPESSSTPEV 210
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 158 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 283
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 113 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 265
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = +2
Query: 257 PSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPYP 436
PS + VD N + D +PE N D Y+ DP N +A + I N
Sbjct: 767 PSRSDPVDCSNDMSSDSLSPENNETADDVLVEGYSVAIVDPCSNEKSAYHAHIPNDVANN 826
Query: 437 QTCPWVSAPLDVRGS 481
+ W P + S
Sbjct: 827 EVEEWQIDPSSTKES 841
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 311 TPERNPKEADYTAPIYAPQNRDPLQNA---DAAINYWIQNGAPYPQTCPWVSAPLDVRG 478
TP + D T P+++P DPL A N I PYP +S+P+ VRG
Sbjct: 256 TPWQTELANDATLPVHSPT--DPLGKALVTSNKSNLDIVTQTPYPHIQSPMSSPVQVRG 312
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 325 PQRGGLHCTDLRTAEPGSSTKRRR 396
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 122 DKESEHREGFT---ALV-----REMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 271
+KE+ H EGF+ ALV +E+++ L V+P + +++ + Y D+P +IN
Sbjct: 139 EKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMIN 196
>09_04_0284 +
16384553-16384755,16384884-16385199,16385889-16385971,
16386802-16386849,16387701-16387965,16388058-16388189,
16388313-16388448,16388557-16388594
Length = 406
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 212 ISVLPNVNSSIYFD--VPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQ 385
+ VL +VN ++ + + + + LV V++ AF R K YT+ D +
Sbjct: 295 VKVLDSVNITLGAEDELKNAVGLVRPVSV-AFQVINGFRMYKSGVYTSDHCGTSPMD-VN 352
Query: 386 NADAAINYWIQNGAPY 433
+A A+ Y ++NG PY
Sbjct: 353 HAVLAVGYGVENGVPY 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,413
Number of Sequences: 37544
Number of extensions: 256196
Number of successful extensions: 705
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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