Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C11
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.093
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     31   0.50 
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              30   1.1  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              29   2.7  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               29   2.7  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   4.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)                      28   4.6  
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    27   6.1  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 116 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 265
           +DDK++E +E FT  V      + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 116  VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 265
            +DDKE E  E FT  +    + +NVKP     + +  N ++SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +2

Query: 92   KKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 271
            +KT      DD++ E  E FT  +  M   +  KP+    ++++ N ++++ F V S++ 
Sbjct: 5260 RKTIQIPITDDQKVEGDESFTVAITSMNPNVMTKPD-TATVTIIDN-DATVGF-VESLVV 5316

Query: 272  LVDI 283
            L D+
Sbjct: 5317 LEDV 5320


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 95   KTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 265
            K F    +DD   E+ E F  +       + V P++  V  V+ + ++ I FDVPSI
Sbjct: 950  KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
 Frame = +2

Query: 140 REGFTALVREMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQA 298
           ++ FT L +E+  A  +      +P + L  +V          ++V  I  ++D++N+ A
Sbjct: 265 KQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMA 324

Query: 299 FDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAP 430
           +D       P+   +TA +  P   +       A  YWI  GAP
Sbjct: 325 YDL-RGMWEPETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAP 364


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   GFDGIDLSWQLPKRKPKKIRSSIGSF 79
           GFDG+DL W+ P  +    +S  G F
Sbjct: 134 GFDGLDLDWEYPGMRGGSPKSDKGRF 159



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   GFDGIDLSWQLPKRKPKKIRSSIGSF 79
           GFDG+DL W+ P  +    +S  G F
Sbjct: 519 GFDGLDLDWEYPGMRGGSPKSDKGRF 544


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -1

Query: 237 LFTFGKTLITNCILGFTLSACFISRTRAVKPSLCSDSLS---STGVVP-NVFLMLCQKDP 70
           ++TFG   + +C  G+T   C I++ + V PSL +  +     T  VP +  ++ C K  
Sbjct: 290 IYTFGNETVCDCNPGYTGQRCTINK-QCVVPSLNTGEIGGKYETERVPGSKMVLFCNKG- 347

Query: 69  ILERIFFGFLFGNCQDRS 16
               I   + FG C D S
Sbjct: 348 ----ISLSWRFGVCVDGS 361


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 385 KRRRCYKLLDSKWCALPT 438
           K  RCY L DSK C +PT
Sbjct: 327 KAPRCYNLCDSKTCIIPT 344


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 113  PVDDKESEHREGFTALVREM 172
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 89  IKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 247
           +KK F  + V     EH+ GF  +      A + K +++LV S  P + +SIY
Sbjct: 306 LKKPFKQSEVVKNTKEHQNGFPFVAATTSGAAHWKTSVELVNS--PALGTSIY 356


>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
          Length = 441

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 346 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 173
           SV   F  T + +I  + C DV+ V  + +   V VNG     QNA+  + + F +   F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306

Query: 172 HLTYKSGEAF 143
           H   K  +AF
Sbjct: 307 HHIAKMLQAF 316


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 344 TAPIYAPQNRDPLQNADAAINYWIQNGAPYPQTCPWVS 457
           T P+ +   ++ + +  A+ NYW+    P    C W++
Sbjct: 620 TEPLPSSGFKEYMDSLPASSNYWLAGAKPRDDICQWLA 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,389
Number of Sequences: 59808
Number of extensions: 312927
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)