Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C11
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 43 9e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 39 0.002
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 38 0.004
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 33 0.076
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 33 0.10
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 32 0.23
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 32 0.23
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 30 0.71
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro... 30 0.94
At1g67790.1 68414.m07736 expressed protein 29 1.6
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 29 2.2
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 29 2.2
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 28 2.9
At4g02680.1 68417.m00363 tetratricopeptide repeat (TPR)-containi... 27 5.0
At1g50790.1 68414.m05712 hypothetical protein 27 5.0
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 27 6.6
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 27 6.6
At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containi... 27 8.8
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 27 8.8
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 43.2 bits (97), Expect = 9e-05
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 140 REGFTALVREMKQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAFDYYTP 316
RE +A+V E + KP + L +V + N S+ + V ++ + +D VN+ A+D+Y P
Sbjct: 156 REWRSAVVAEASSS--GKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGP 213
Query: 317 ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAP 430
+ + A ++ P N P + DA WIQ G P
Sbjct: 214 GWS-RVTGPPAALFDPSNAGP--SGDAGTRSWIQAGLP 248
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 167 EMKQALNVKPNMQLVISVL-PNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADY 343
E + + KP + L +V +V + + V + +D VNI A+D+Y P + K
Sbjct: 154 EAESRRSSKPTLLLTAAVYYSSVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFTVP 213
Query: 344 TAPIYAPQNRDPLQNADAAINYWIQNGAP 430
TA ++ N + + D+ + WI++G P
Sbjct: 214 TAGLHVSSNNEG-PSGDSGLKQWIKDGLP 241
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Frame = +2
Query: 143 EGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAF 301
+ F L+RE + A+ KP + L +V + + S+ V ++ + +D VN+ A+
Sbjct: 147 DNFGKLLREWRLAVEAEARSSGKPRLLLTAAVFYSYSYYSVLHPVNAVADSLDWVNLVAY 206
Query: 302 DYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAP 430
D+Y + + AP+Y P P + DA + W Q G P
Sbjct: 207 DFY-ESGSSRVTCSPAPLYDPITTGP--SGDAGVRAWTQAGLP 246
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 33.5 bits (73), Expect = 0.076
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 227 NVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAIN 406
N N +Y V I L+D VNI+A+D+Y P + T P A + + D+ +
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFY----GPGCTEVTGPPAALYLQSDGPSGDSGVK 131
Query: 407 YWIQNGAP 430
WI G P
Sbjct: 132 DWIDAGLP 139
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 33.1 bits (72), Expect = 0.10
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +2
Query: 248 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGA 427
+ V +I + +D VNI A+D+Y P +P A ++ P N ++ D+ ++ W++
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSPVTGP-PAALFDPSN-PAGRSGDSGLSKWLEAKL 236
Query: 428 P 430
P
Sbjct: 237 P 237
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 31.9 bits (69), Expect = 0.23
Identities = 32/143 (22%), Positives = 60/143 (41%)
Frame = +2
Query: 2 GFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQA 181
GF G+DL W+ P+ + + F +++ + S G TAL+ + A
Sbjct: 110 GFHGLDLDWEYPRNE-----EEMYDFGKLLEEWRSAVEAESNSS----GTTALI--LTAA 158
Query: 182 LNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYA 361
+ N Q + + V +I N +D +N+ A+D+Y P + A +Y
Sbjct: 159 VYYSSNYQ-----------GVPYPVLAISNSLDWINLMAYDFYGPGWSTVTGP-PASLYL 206
Query: 362 PQNRDPLQNADAAINYWIQNGAP 430
P + ++ D+ + W + G P
Sbjct: 207 PTDG---RSGDSGVRDWTEAGLP 226
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 31.9 bits (69), Expect = 0.23
Identities = 22/99 (22%), Positives = 40/99 (40%)
Frame = +2
Query: 143 EGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPER 322
E + A V E N P + + + V +I + +D VNI A+D+Y P
Sbjct: 152 EEWRAAVVEESDKTNQLPLLLTAAVYYSPQYDGVEYPVKAIADNLDFVNIMAYDFYGPGW 211
Query: 323 NPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPYPQ 439
+P A + P N ++ ++ + W+ P+
Sbjct: 212 SPVTGPPAALFHDPSN-PAGRSGNSGLRKWLDEAKLPPK 249
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 176 QALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYY--TPERNPKEADYTA 349
Q ++P + + +S+ + V +I +D VN+ A+++Y T E P A
Sbjct: 137 QRTGIRPLLLTAAVYYTSDYNSVSYPVQAINRSLDWVNLIAYEFYGLTTEIGP-----PA 191
Query: 350 PIYAPQNRDPLQNADAAINYWIQNGAP 430
+Y P + P D + +W++ G P
Sbjct: 192 GLYDPSIKGPC--GDTGLKHWLKAGLP 216
>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
protein
Length = 420
Score = 29.9 bits (64), Expect = 0.94
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 2 GFDGIDLSWQLPKRKPKKIRSSI 70
GF GI ++W L K PK++R S+
Sbjct: 30 GFAGISVAWHLLKESPKELRLSV 52
>At1g67790.1 68414.m07736 expressed protein
Length = 576
Score = 29.1 bits (62), Expect = 1.6
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 240 ELFTFGKTLITNCILGFTLSACFISRTRAVKPSL-C---------SDSLSSTGVVPNVFL 91
E F + + N ILG TLS +++ R VK +L C + +S T V V L
Sbjct: 182 EKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTCMQQIPYFKQTQQISITEVQDKVTL 241
Query: 90 MLCQKDPILERIFF 49
+L K P+ E +FF
Sbjct: 242 LLLSKPPV-EPLFF 254
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 304 VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 173
+K DVD + + ++ W N +Y+ + DN I IE +F
Sbjct: 358 IKKWDVDKIRKFHERWYFPANATLYIVGDIDNIPRIVHNIEAVF 401
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 101 FGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLV-----ISVLPNVNSSIYFDVPSI 265
FG D+K ++H +G + + L + PN QL+ S +PN S + + P +
Sbjct: 44 FGWQNFDNKINDHNDGCMNMHNSFFEGLLIDPNDQLLPDPWSKSTIPNAKSELLENFPFL 103
Query: 266 INL 274
N+
Sbjct: 104 DNM 106
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 93 LMLCQKDPILERIFFGFLFGNCQ 25
L+L K P LE + GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358
>At4g02680.1 68417.m00363 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 888
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 134 EHREGFTALVREMKQALNVKPNMQLVISVLPNVNS 238
EH T+ +R+ + AL+V PN Q ++ + VNS
Sbjct: 851 EHIGDVTSALRDCRAALSVDPNHQEMLELHSRVNS 885
>At1g50790.1 68414.m05712 hypothetical protein
Length = 812
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 194 PNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNR 373
P ++++PN + + I + +V I + ++Y P R + ++ P NR
Sbjct: 339 PEKATWVTLVPNRDDE-FISFARCIMVSQLVGIDSLEHYYPNRVASQFGRLQDVHCPVNR 397
Query: 374 DPLQNADAAINYW 412
+ L A +Y+
Sbjct: 398 NNLSREAAWNDYY 410
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +2
Query: 47 PKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLP 226
P +R IG F KKT P D K+ + T + + L PN ++ +
Sbjct: 106 PSHVRKQIGEFGKVFKKTCEDKPADQKQ-RWVKALTDISNIAGEDLRNGPNDAHMVEKIA 164
Query: 227 NVNSSIYFDVPSIINLVDIVNIQ 295
N S+ F P D+V I+
Sbjct: 165 NDVSNKLFHPPK--GFGDLVGIE 185
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 449 KDKFVGKAHHFESSNL*QRRRFVEDPGSAVRKSVQCSPPL 330
+D HH N+ +R F+ P + S+QC P L
Sbjct: 39 RDAISRSNHHQSQMNMLERSLFLYQPQEPLNTSIQCLPLL 78
>At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 641
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 189 TLSACFISRTRAVKPSLCSDSLSSTGVVPNVFLMLC 82
T+ AC++ A + L + + G PNV +LC
Sbjct: 215 TVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLC 250
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 5 FDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALV 163
FD I+ + + K + K + +I F H+ FG TP+DD + LV
Sbjct: 325 FDAIESAMRSLKVE-KLVIPAIPDFLHAWTGNFGFTPLDDSVRKEMRSLNTLV 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,452
Number of Sequences: 28952
Number of extensions: 211169
Number of successful extensions: 665
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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