Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C09
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...   101   3e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   2.2  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   2.2  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   8.8  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score =  101 bits (243), Expect = 3e-23
 Identities = 48/82 (58%), Positives = 60/82 (73%)
 Frame = +2

Query: 116 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 295
           E    YY  KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR         GSYVGEV+
Sbjct: 14  ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73

Query: 296 KPMDKKKVLVKVHPEGKFVVDL 361
           K M K KVLVKVHPEGK+VVD+
Sbjct: 74  KTMGKNKVLVKVHPEGKYVVDI 95


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 149 EELQLIVAEKSQNLRRLQAQ 208
           EEL+LI   K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 71  ANMTVTKMEVDSTKGEGFRPYYITKIEELQLIVAEKS 181
           A +TV   E+ S+KG  F P  ++ + +  L+ +E++
Sbjct: 361 AKITVGGKEISSSKGYFFEPTVLSGVTQDMLVASEET 397


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 152 ELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEV 292
           E++  VAE      +L+A + +L+ +   LR           YVG V
Sbjct: 16  EMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,839
Number of Sequences: 5004
Number of extensions: 23402
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)