Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C09
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 107 2e-24
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 75 1e-14
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 0.88
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 0.88
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 28 2.0
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 2.7
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 28 2.7
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 2.7
02_01_0642 - 4803464-4805665,4806231-4806320 27 4.7
11_04_0367 - 16840732-16843428,16844425-16844760 27 6.2
11_01_0461 + 3569700-3572373,3572477-3572847 27 6.2
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 27 6.2
03_02_0845 - 11700830-11701327 26 8.2
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 107 bits (258), Expect = 2e-24
Identities = 51/83 (61%), Positives = 62/83 (74%)
Frame = +2
Query: 113 GEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEV 292
GEG R YY+ I +LQL + +K+ NL RL+AQRN+LN++VRMLR GSYVGEV
Sbjct: 34 GEGLRQYYLQHIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEV 93
Query: 293 VKPMDKKKVLVKVHPEGKFVVDL 361
VK M K KVLVKVHPEGK+VVD+
Sbjct: 94 VKVMGKSKVLVKVHPEGKYVVDI 116
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 75.4 bits (177), Expect = 1e-14
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = +2
Query: 110 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 289
+G+G RPYY ++I +LQL + + + NL RL+AQRN LN++V L GSYVGE
Sbjct: 32 RGDGLRPYYQSRIHDLQLQIRQGTDNLSRLEAQRNVLNSQVITLGEELKVLHEPGSYVGE 91
Query: 290 VVKPMDKKKVLVK 328
VVK M K KVLVK
Sbjct: 92 VVKVMGKSKVLVK 104
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 29.5 bits (63), Expect = 0.88
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 272 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLXQK 370
G +GEV++P+D ++ +VK ++VV K
Sbjct: 62 GQIIGEVLRPLDSERFIVKASSGPRYVVGCRSK 94
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 29.5 bits (63), Expect = 0.88
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 272 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLXQK 370
G +GEV++P+D ++ +VK ++VV K
Sbjct: 61 GQIIGEVLRPLDNERFIVKASSGPRYVVGCRSK 93
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 162 LSWLKSLKIFVVYKLNVMN*TLKYVCCVKNSSFYRNRVHMW 284
L +L SLK+ + L V L V N+ F+RN V++W
Sbjct: 537 LPFLNSLKMKMSILLGVAQMNLGIVISYFNAKFFRNSVNVW 577
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 146 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 235
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 309 LEEVQKLTVENLQLKGELQSQREELNSQKR 338
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 146 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 235
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 495 LEEVQKLTVENLQLKGELQSQREELNSQKR 524
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 146 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 235
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 366 LEEVQKLTVENLQLKGELQSQREELNSQKR 395
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 140 TKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 244
+K+E +Q+ V EK L Q + E+N++V L+
Sbjct: 474 SKVESIQIAVQEKDSELSETQRRLAEVNSEVVELK 508
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +2
Query: 89 KMEVDSTKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELN 223
++E+D T EGF+ + +++L+ + ++ L L+ +N
Sbjct: 740 QLELDFTFEEGFKKFRYQSVQQLEYVTVSHNEILESLRPHEGLIN 784
>11_01_0461 + 3569700-3572373,3572477-3572847
Length = 1014
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2
Query: 17 FHFIVNLNLFTVCETK*LANMTVTKMEVDSTKGEGFRPYYITKIEELQLIVAEKSQNLRR 196
F +IV+ NL T T+TK+ + + G P I K LQL A ++ L R
Sbjct: 172 FLWIVHNNLTGTIPTSLFNITTLTKLSIGFNQINGEVPKEIGKSRVLQLFAASGNKLLGR 231
Query: 197 LQ 202
Q
Sbjct: 232 FQ 233
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 258 FYRNRVHMWVKLSNLWTKRRCW*KC 332
FY R++ W++ ++ KR C+ C
Sbjct: 273 FYNARINKWLRAPDMLQKRHCFGSC 297
>03_02_0845 - 11700830-11701327
Length = 165
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 265 GTGFICG*SCQTYGQKEGAGKSAPR 339
G G++ G + ++ Q+ G G +APR
Sbjct: 10 GVGYLVGGAASSWSQRRGRGVAAPR 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,391,337
Number of Sequences: 37544
Number of extensions: 135753
Number of successful extensions: 270
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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