Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C09
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)              107   2e-24
SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)                     107   2e-24
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)                    27   4.9  
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  27   4.9  

>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score =  107 bits (258), Expect = 2e-24
 Identities = 52/69 (75%), Positives = 58/69 (84%)
 Frame = +2

Query: 155 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 334
           ++L+V EK +NLRRL+AQRNELNAKVRMLR         GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82  VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141

Query: 335 PEGKFVVDL 361
           PEGKFVVD+
Sbjct: 142 PEGKFVVDI 150


>SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)
          Length = 158

 Score =  107 bits (258), Expect = 2e-24
 Identities = 52/69 (75%), Positives = 58/69 (84%)
 Frame = +2

Query: 155 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 334
           ++L+V EK +NLRRL+AQRNELNAKVRMLR         GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82  VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141

Query: 335 PEGKFVVDL 361
           PEGKFVVD+
Sbjct: 142 PEGKFVVDI 150


>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
          Length = 1014

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 110 KGEGFRPYYITKIEELQLIVAEKSQ 184
           KG+G +P  +  +EE ++I ++KSQ
Sbjct: 494 KGKGHKPLPLVPVEEFEVISSKKSQ 518


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 143 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 244
           K+EE + + A+K ++ + LQ + NELN ++  L+
Sbjct: 22  KLEESKNLYAKKLESEKELQDKINELNTEISSLQ 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,912,390
Number of Sequences: 59808
Number of extensions: 160755
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)