Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C09
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.054
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 0.054
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 22 FYSEPELIYCM*NEIISKHDCH*NG 96
          FYSE +  +C+   + S H CH NG
Sbjct: 5  FYSEADASHCIQQILESVHHCHHNG 29


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 80  TVTKMEVDSTKGEGFRPYYITKIEELQLIVAEKSQNLRRLQA 205
           TVT +E   +K EG +   + K++  +  + +  +NLR+  A
Sbjct: 114 TVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSA 155


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +3

Query: 108 QKVRAFVLTTSRKLKNCNLSWLKSL 182
           + ++ + LT + ++KN N+ W K +
Sbjct: 91  KNIKLYGLTKNLEIKNYNIDWDKCI 115


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 243  VKNSSFYRNRVHMWVKLSNLWTKRRC 320
            +++ S +  R HM+ +L++    RRC
Sbjct: 1676 IRSHSTWDPRRHMYEELNHCAPNRRC 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,135
Number of Sequences: 438
Number of extensions: 1654
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)