Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C08
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.75
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 2.3
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.0
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 4.0
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 5.3
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 5.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 5.3
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 24 9.3
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 24 9.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.3
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 24 9.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 9.3
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 24 9.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 24 9.3
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 0.75
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 104 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 214
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 244 LMTSYYFPFAQRPDNYNLHSVXNYEAIRFLD 336
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 325 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEQA 423
+FL+I+ +T + L G E G KK++ +HD +A
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 190 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 282
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 4.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 133 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 303
NFY + YF T G+ S+P F + YP S Y P P ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 343 EKTFVQSLQKGKFESYGKKIDFHDEQAIN 429
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 5.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 64 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 222
H FWWS + NL E+ NF L FE N + EFS SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 5.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -2
Query: 282 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 154
RP + ++V SH+ I+++L + RVP YG KT ++ C
Sbjct: 30 RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 325 RFLDIFEKTFVQSLQKGKFESYGKKIDFHDEQ 420
RF +++EK +V L + K + +K +DEQ
Sbjct: 381 RFREMYEKAYVSKLSEQKKGNGTQKAILNDEQ 412
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 22 EDIGFNSYYYYFHSHLPFWWSSERYG 99
+DIG +Y L F W S+R+G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 325 RFLDIFEKTFVQSLQKGKFES 387
RF+DIFE+TF S + KF S
Sbjct: 528 RFIDIFEQTF-SSKKNAKFIS 547
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 76 WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 174
+WS+ N K R E Y NF++ + T ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 9.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 49 YYFHSHLPFWWSSERY 96
Y + PFWW+S+R+
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 1 QRLTYLTEDIGFNSYYYYFHSHL 69
Q++ Y+ ++ NSY Y HSH+
Sbjct: 317 QKIHYINDNDPSNSYSSYQHSHV 339
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 169 RSNNVLLIVGRNCNIFRHG 113
R+N+ L+I G C +FR G
Sbjct: 963 RNNDFLIIYGIGCEVFRLG 981
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,797
Number of Sequences: 5004
Number of extensions: 35961
Number of successful extensions: 122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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