Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C08
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   3.0  
07_03_1700 - 28810239-28810870,28811304-28812594                       27   5.2  
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    27   6.9  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    27   6.9  

>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 TVLLRSSXRCVDCSCPAFERMG 263
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>07_03_1700 - 28810239-28810870,28811304-28812594
          Length = 640

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 282 GQLQSTQRXELRSNTVLGHF*KDFRTVPTERQI 380
           G+L S Q   LRSN + G    D  T+P+ R I
Sbjct: 94  GKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSI 126


>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
            25325314-25325382,25325489-25325557,25325646-25325720,
            25325805-25325909,25326394-25326492,25326626-25328344,
            25328629-25328931,25329031-25329129,25329733-25329850,
            25329933-25330018,25330091-25330159,25330232-25330306,
            25330675-25330772,25331271-25331432,25332391-25332556,
            25332902-25332970,25333064-25333126,25333221-25333376,
            25334027-25334365
          Length = 1410

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 173  VLQTAWVPYLNSLGTRLLRLVTI 241
            +L  A+VPYL  L +  LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 173  VLQTAWVPYLNSLGTRLLRLVTI 241
            +L  A+VPYL  L +  LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,939,077
Number of Sequences: 37544
Number of extensions: 200466
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)