Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C08
(448 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 29 1.8
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30) 27 5.3
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 7.1
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 8.9
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 27 9.3
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0) 27 9.3
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 27 9.3
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012) 27 9.3
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.7 bits (66), Expect = 0.57
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 229 TGYYPLMT-SYYFPF--AQRPDNYNLHSVXNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 399
T Y P T S Y Q+P+N++LH +A+ T L GKF+S G+
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770
Query: 400 IDFHD 414
D H+
Sbjct: 4771 RDVHE 4775
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 421 PVHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSXRCVDC 290
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 104 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 229
+ +A AKYI +S + + VI + S + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207
>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
Length = 173
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/56 (23%), Positives = 20/56 (35%)
Frame = +1
Query: 7 LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 174
+ Y E + F S + FH W H+ E+Y+N L + R
Sbjct: 29 VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 43 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 168
YYYY++ + +++ Y H YY +Y YY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 43 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 168
YYYY++ + +++ Y H YY +Y YY+
Sbjct: 110 YYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/52 (25%), Positives = 19/52 (36%)
Frame = +1
Query: 19 TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 174
TE + F S + FH W H+ E+Y+N L + R
Sbjct: 48 TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYR 99
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.1 bits (57), Expect = 7.1
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 148 LTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQR-PDNYNLHSVXNYEAI 324
LTTR + + LG+ P YSP TG P + Y P + N N + A+
Sbjct: 700 LTTRQLLQVILLCLGTSPTSPQYSPASTG--PSPSPEYSPSSPNYTPNINTSAYSLVPAL 757
Query: 325 RFLDIFEKTFVQS---LQKGKFESYGKKIDFHDEQAINFVGNYW 447
L I+ K ++ ++ + E+ KIDF ++ + G W
Sbjct: 758 TPL-IYPKDLTKAKKMTKQNRKENKSDKIDFLEQDPLPEGGWGW 800
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 23.0 bits (47), Expect(2) = 8.9
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Frame = +1
Query: 67 LPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYY-- 240
L FW +++ ++ R EI+Y Y RL++ G+ + ++ ++
Sbjct: 1204 LKFWRTNKSQKHIGKRYREIHYKLLGDAVHASYHIRLSSFYGAWTHLPFVRLVERKFHLY 1263
Query: 241 ------PLMTSYYFPFAQRPDNYNLHSVXNYEAIRF 330
P + F ++ NY+ + N +A+++
Sbjct: 1264 CGKHDSPFICDNSFITSKNDSNYSQDQLLNNDALQY 1299
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 349 TFVQSLQKGKFESYGKKIDFHD 414
T V ++ GKF +YG+ + D
Sbjct: 1322 TLVGGIKAGKFNTYGRMDNMDD 1343
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 46 YYYFHSHLPFWWSSER 93
+YYF + WW SER
Sbjct: 7 FYYFTKFIDIWWCSER 22
>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
Length = 372
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 288 LQSTQRXELRSNTVLGHF*KDFRTVPTERQIRIVWQE 398
L + NT HF + + TV +R I I W E
Sbjct: 84 LDENSKSSTMKNTWTSHFKRGYLTVHPDRTISIEWDE 120
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 235 YYPLMTSYYFPFAQRPDNYN 294
Y PL T+ ++ + RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579
>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
Length = 89
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 89 RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 229
+ +VTL I ++ S N+ +H + + +VPY +S+ T LL+
Sbjct: 29 KSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 282 RPLSEWEIV*SHQGIVTSLN 223
RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,676
Number of Sequences: 59808
Number of extensions: 251630
Number of successful extensions: 703
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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