Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C08
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.47 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    30   0.62 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   1.4  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   3.3  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   4.4  
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat...    27   5.8  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   5.8  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 243 GIVTSLNRRVPREFRYGTQAVCKT 172
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 274 QRPDNYNLHSVXNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEQAINFV 435
           Q+P+ +        EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 204 QKPETF-WEKHYGLEAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 240 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 151
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +1

Query: 106 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 282
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 181  NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVXNYEAIRFLDIFE 345
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
           similar to to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 853

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 382 RICLSVGTVRKSFQKCPRTVLLRSSXRCVDCSCPAFE 272
           R C+S G V +  + CP+ ++  S    V CS    E
Sbjct: 128 RTCISAGCVVELKKTCPKDLMKMSRENLVACSSTCME 164


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 326 GSWTFLKRLSYSPY 367
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,144,338
Number of Sequences: 28952
Number of extensions: 174795
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)