Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C07
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   0.99 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   2.3  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    24   7.0  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    24   7.0  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   9.3  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 51  LSLATQHILIKCYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVD 191
           L++   H++  C  N++ ++++VN SIA   +A        ND  VD
Sbjct: 334 LAMTRPHLVHSCNLNIESLITDVNRSIAT--YAITTLLKTGNDESVD 378


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 105 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSP-NKKIPSKLPTK 269
           I SE  ++  +    ++H    DN + ++ + + +    S  SP  KK  S LP +
Sbjct: 248 ISSEAAQASRSSFQVERHRPTPDNSAVIEAARRTYSSISSSSSPFKKKTQSHLPNR 303


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 126 SIAAGKHADKHNTDGDNDS----GVDESTQGHDMNGSPGSPNKKIPSKLP 263
           S+ +   +   NTD    S     ++ ++ G D +    SP+++IPS  P
Sbjct: 32  SLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREIPSDPP 81


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 93  NVDCIMSEVNESIAAGKHADKH--NTDGDNDSGVDESTQGHDMNGS--PGSPNKKI 248
           NVD  M E  ++      +++     DG+ D+G+DE  Q +D   S  P  P  KI
Sbjct: 27  NVDTEMGEFEDAYEDEIESEEEYIEADGEKDNGMDEEEQ-NDAQPSKIPWLPGGKI 81


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 DKHNTDGDNDSGVDESTQGHDMNGSPGSP 236
           D+ + D D D+  DE+ +    N S  SP
Sbjct: 354 DESSEDDDEDNNTDEANEDAQSNVSDESP 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,715
Number of Sequences: 5004
Number of extensions: 26197
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)