Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C07
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 28 2.9
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 27 3.8
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 27 3.8
10_08_0077 + 14690894-14691030,14691258-14691936 27 5.0
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 27 5.0
03_05_0618 + 26177743-26178420,26179477-26179617 27 5.0
01_01_1127 + 8930593-8932681,8932812-8933401 27 5.0
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 27 6.6
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 6.6
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 27 6.6
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 26 8.7
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 129 IAAGKHADKHNTDGDNDSGVDESTQG--HDMNGSPGSPNKKIP 251
+A K +K +D D D +G HD N SPG N +P
Sbjct: 220 VAVFKDTEKDRSDPDYDRNYKRYVRGPVHDFNVSPGGFNFVVP 262
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 87 YWNVDCIMSEVNESIAAGKHADKHNTDGDND 179
Y+N + ++SE NESIA + A+ D+D
Sbjct: 233 YYNEETLVSEANESIAESEVANHPKKQWDDD 263
>01_01_0572 -
4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 138 GKHADKHNTDGDNDSGVDESTQGHDMN 218
GK D +DG+ND G D +D N
Sbjct: 432 GKDDDSSGSDGENDVGSDGENDAYDPN 458
>10_08_0077 + 14690894-14691030,14691258-14691936
Length = 271
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 340 GVLAVALLLEDRERLAFKLLLDFSFVGNL 254
G AV + +ED E FKLLL F + +L
Sbjct: 148 GDAAVVVCIEDMEARVFKLLLRFMYTDSL 176
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 90 WNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGH 209
W + C+ + ++AA A + D D+D + E Q H
Sbjct: 140 WRMYCLEERIQANVAANAGAGGEDDDDDDDVVIVEEPQVH 179
>03_05_0618 + 26177743-26178420,26179477-26179617
Length = 272
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 141 KHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 257
+ ++ D ++++G DE + NGS GS P+K
Sbjct: 221 EEGEEEAEDEEDEAGADEEDESKVANGSKGSSGSAQPNK 259
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 111 SEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMN 218
S++ ++ G+ DGD D G DE +G+D N
Sbjct: 52 SDIGPAMGRGR-GKPPGDDGDGDGGGDEEEKGYDEN 86
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 117 VNESIAAGKHADKHNTDGD--NDSGVDESTQGHDMNGSPGSPNKKIPSKLPTK 269
V++ +A G + T + N + ES H+ GSPN+K+ + LP K
Sbjct: 185 VSDRVAKGTKRRRRRTKEEMKNAAAKSESAMAHE-----GSPNRKVGTSLPRK 232
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 138 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKI 248
G A+K + G SGVD S+ P P+K +
Sbjct: 1488 GHEAEKEDLTGQPKSGVDNSSIKSAQKSEPSDPSKVV 1524
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 147 ADKHNTDGDNDSGVDESTQGHDMNGSP-GSPNKKIPSKLPTKE 272
+ KH + +N++G++ S G +N S +PN + S+ PTKE
Sbjct: 310 SSKHVEESENNAGLNLSLFGKHINESENNAPNVAVRSE-PTKE 351
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 108 MSEVNESIAAGKHADKHNTDGDND 179
+ ++ E I +G ++KH+TD D D
Sbjct: 64 LQDLVEEIKSGLQSEKHDTDNDRD 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,082,052
Number of Sequences: 37544
Number of extensions: 158735
Number of successful extensions: 496
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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