Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C07
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.034
SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.059
SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.24 
SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)                 28   2.9  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 27   3.9  
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     27   6.8  
SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3)                    26   9.0  
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 26   9.0  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.0  
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)                   26   9.0  
SB_1226| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.0  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                26   9.0  
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)               26   9.0  
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  26   9.0  
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            26   9.0  

>SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 34.3 bits (75), Expect = 0.034
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 144 HADKHNTDGDNDSGVDESTQGHDMNG 221
           H D  +   DND GVD+   GHD NG
Sbjct: 701 HVDNDDCHDDNDDGVDDDDDGHDDNG 726



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 IAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPN 239
           ++ G+  DK+N DG ND  VD S  GHD N +    N
Sbjct: 653 LSQGEGDDKNNDDGGNDD-VD-SDDGHDDNDNDDDGN 687


>SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 33.5 bits (73), Expect = 0.059
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 84  CYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIP 251
           C   +D IMS    ++A  +     NTD D+D  + E T+ ++     GSP K  P
Sbjct: 115 CEALLDKIMSSKPSTLADSRGQPDQNTDSDDDEDLRELTKEYESEDLTGSPLKSEP 170


>SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 120 NESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPG 230
           N+S       D    D DNDS VD+   G+D NG  G
Sbjct: 140 NDSAVDDDDNDSAVDDDDNDSAVDDYKNGYDDNGDDG 176


>SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 138 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTK 269
           G  +D H T GD  S    +T+G   +G P  P  K   K+P++
Sbjct: 108 GMSSDSHATRGDGVSSDSHATRG---DGVPSEPYAKRDDKMPSE 148


>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
          Length = 256

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 171 DNDSGVDESTQGHDMNGSPGSPN 239
           DND   D+   GHD NG  G  N
Sbjct: 197 DNDDDDDDDDDGHDDNGGDGGGN 219


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 301 SLGLQAKVQQL--KHQRIHHQLKRKKY 375
           S+GL+ KV Q   K ++IHH+ + KKY
Sbjct: 116 SVGLERKVPQRGSKKEKIHHKSRSKKY 142


>SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 150 DKHNTDGDNDSGVDESTQGHDMNG 221
           DK N D DND  VD+    +D +G
Sbjct: 64  DKDNDDYDNDDDVDDDNDDYDDDG 87


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 111 SEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKE 272
           S   E +   K A K  T+   DS  D+ + G D +  P    KK+  K PTK+
Sbjct: 98  SSDEEEVKPKKDAKKAATE---DSSSDDDSSGEDEDEKP---KKKVEKKTPTKQ 145


>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 168 GDNDSGVDESTQGHDMNG--SPGSPNKKIPSKLPTKE 272
           G+ +SG DE T+G +M G  S  +P+  + +  P  E
Sbjct: 404 GEEESGEDEGTEGDEMGGEASKTTPDTPVSASGPQME 440



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 168 GDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKE 272
           G+ +SG DE T+G    G+   P +   S  P KE
Sbjct: 280 GEEESGEDEDTEGD--GGTSSGPRRGSSSTTPKKE 312


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 42  RECLSLATQH-ILIKCYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMN 218
           +E   L   H + + C  N+   + +   S     H D  N DGDND G D    G +  
Sbjct: 301 QEMTGLCVSHAVCVLCAGNLRMSLGDGVMSTGLNLHVD--NGDGDNDDG-DNVCDGDNNY 357

Query: 219 GSPGSPNKKI 248
           G  G  +  +
Sbjct: 358 GDNGGASDDV 367


>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 150 DKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 257
           D+HN++GD+D G  +   G D +   G     IP K
Sbjct: 349 DEHNSNGDDD-GDGDGDGGDDDDDDDGDETVMIPGK 383


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 117 VNESIAAGKHADKHNTDGDNDSGVDESTQGHDMN 218
           + +SIA G H      D   D+G  E ++GH  N
Sbjct: 701 LEQSIAGGSHGLSETEDVHKDAGDIELSEGHRTN 734


>SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3)
          Length = 222

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 165 DGDNDSGVDESTQGHDMNGSPG-SPNKKIPSKLPTKE 272
           +GD D+   +S  G     S G SPNKK  SK+P  E
Sbjct: 169 EGDKDNADKDSEDGDKAVDSEGKSPNKK-DSKMPAVE 204


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 144 VFPQQLIHLLPTLCNQRSSNT**ECVV*RATNTHVITKQSKGKHS 10
           VF  +L+H+LP    +  SN   E +  +  N     KQS   H+
Sbjct: 306 VFQGRLLHILPAKAKKEESNDNEESISYKKKNEEKKKKQSGSDHN 350


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 141  KHADKHNTDGDNDSGVDESTQGHDMNGSPG 230
            K ADK + D ++D G+DES    D   SPG
Sbjct: 1574 KSADKSSVDFNSDIGIDES----DDRSSPG 1599


>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
          Length = 291

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 102 CIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNG 221
           C++S+V++S  AG        DGD+D G        D +G
Sbjct: 245 CLVSDVDDSGNAGNGDGSGFRDGDDDGGDSNGDGSGDGDG 284


>SB_1226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 123 ESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSP 227
           E   A   A+  N DGD+D   D+    +D N  P
Sbjct: 7   EGRTASDTANGDNNDGDDDDDDDDDDADNDANDEP 41


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 141  KHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKK 245
            K+  KH   GD+D   D+     D++G  GS  KK
Sbjct: 7464 KYNKKHKGSGDDD---DDDDDDDDVSGDKGSGGKK 7495


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 159 NTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 257
           NTD     G DE+TQ HD N     PN+++  K
Sbjct: 323 NTDQWQAQGDDEATQNHDDN-----PNERVTEK 350


>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 744

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 168 GDNDSGVDESTQGHDMNGSPGSPNKKIP 251
           GD  + V  + +GHD   SP S N   P
Sbjct: 367 GDGSAPVPVNQEGHDQTSSPVSGNDSAP 394


>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 111 SEVNESIAAGKHADKHNTDGDNDS-GVDESTQGHDMNGSPGS 233
           +E ++S  + K  +   +D D++S G DES +  + NGS  S
Sbjct: 135 NESDKSNESDKRNESDESDEDDESNGSDESNESDESNGSDES 176


>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 108 MSEVNES--IAAGKHADKHNTDGDNDSGVDESTQGHDMNGSP 227
           +S VN+    A+    DKH+ + DN    +++T GH +N SP
Sbjct: 99  LSPVNKRPRCASPNTQDKHDLN-DNSVPSNQTTNGHHLNQSP 139


>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 KHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLP 263
           KHNT G++    D+   G+  +G+PG   K+ P   P
Sbjct: 131 KHNTAGEHCELCDDGFYGNAADGTPGD-CKQCPCDAP 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,239
Number of Sequences: 59808
Number of extensions: 199448
Number of successful extensions: 842
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)