Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C07
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 31 0.37
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical ... 28 2.0
Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 27 4.5
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 4.5
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 4.5
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 27 6.0
Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical pr... 26 7.9
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 138 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPS 254
GKH D DSGV +++GH NGS GS + + S
Sbjct: 142 GKHGQGDLASTD-DSGVSSASRGHTPNGSTGSRHVRAAS 179
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 108 MSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNK 242
++E NE A + ++ + D D+D VD +T G + PG+ +K
Sbjct: 260 VTETNEE-ADNEEDEEEDEDDDDDGSVDGTTAGSTESKGPGTTSK 303
>AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical
protein M03F8.3 protein.
Length = 744
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 123 ESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGS 233
E AGK A++ +GD+D+ + ES+ D S S
Sbjct: 694 EKEEAGKDAEEKVREGDSDTDLSESSSSSDSESSSSS 730
>Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical
protein F29D10.3 protein.
Length = 303
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 75 LIKCYWNVDCIMS 113
L+KCYW+ DC++S
Sbjct: 63 LVKCYWDDDCLVS 75
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 153 KHNTDGDNDSGVDESTQGHDMNGSP 227
+HNT+GD+ +E G+ NGSP
Sbjct: 1850 EHNTNGDHCEFCNEGHYGNATNGSP 1874
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 153 KHNTDGDNDSGVDESTQGHDMNGSP 227
+HNT+GD+ +E G+ NGSP
Sbjct: 1850 EHNTNGDHCEFCNEGHYGNATNGSP 1874
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 171 DNDSGVDESTQGHDMNGSPGSPNK 242
D G + H MNGSPG+P K
Sbjct: 455 DGQPGAPGAPGYHGMNGSPGTPGK 478
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 153 KHNTDGDNDSGVDESTQGHDMNGSP 227
+HNT+GD+ +E G+ NGSP
Sbjct: 1850 EHNTNGDHCEFCNEGHYGNATNGSP 1874
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 153 KHNTDGDNDSGVDESTQGHDMNGSP 227
+HNT+GD+ +E G+ NGSP
Sbjct: 1850 EHNTNGDHCEFCNEGHYGNATNGSP 1874
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 174 NDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKE 272
N G D +T D + SP +++P+ +P ++
Sbjct: 428 NTDGTDRATNNDDDSDRSESPEERVPTPMPDED 460
>Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical
protein W01C9.3 protein.
Length = 792
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 316 AKVQQLKHQRIHHQLKRKKYP 378
A++QQL+ Q I HQ+++ + P
Sbjct: 525 AQMQQLQQQNIQHQMQQSRQP 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,485
Number of Sequences: 27780
Number of extensions: 152211
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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