Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C07
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 30 0.45
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P... 29 0.79
At3g03140.1 68416.m00310 expressed protein 29 1.4
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 29 1.4
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 1.4
At1g73660.1 68414.m08530 protein kinase family protein contains ... 28 2.4
At1g01730.1 68414.m00092 expressed protein 27 3.2
At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)... 27 4.2
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple... 27 4.2
At1g79410.1 68414.m09254 transporter-related low similarity to o... 27 4.2
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 27 5.6
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 27 5.6
At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ fami... 27 5.6
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina... 27 5.6
At5g65030.1 68418.m08180 expressed protein ; expression support... 26 7.4
At4g39450.1 68417.m05582 expressed protein 26 7.4
At4g26940.2 68417.m03877 galactosyltransferase family protein co... 26 7.4
At4g26940.1 68417.m03876 galactosyltransferase family protein co... 26 7.4
At3g42140.1 68416.m04327 hypothetical protein 26 9.7
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 30.3 bits (65), Expect = 0.45
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 191 IDSTVIISICVMFIRVFSRSN*FIYFRHYAINVPVTLD 78
+DST+ ++I ++ + +F +YFRH+A + T+D
Sbjct: 46 LDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVD 83
>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 928
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 138 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGS 233
G H DK GDN D+ T G + N +P S
Sbjct: 321 GPHTDKEVALGDNGLQADKETGGEEQNSNPVS 352
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 135 AGKHADKHNTDGDNDSGVDESTQGHD 212
AG+H+++ NT + SG DEST +
Sbjct: 334 AGRHSERRNTFSRHTSGEDESTSSEE 359
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) strong
similarity to dynamin-like protein 6 (ADL6) [Arabidopsis
thaliana] GI:6651399; contains Pfam profiles PF01031:
Dynamin central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain;
identical to cDNA dynamin-like protein ADL3, GI:4803835
Length = 920
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 108 MSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLP 263
M+ N + + ++ + G + D + G D +GS GS + P++LP
Sbjct: 857 MNAFNAAASGPDSLKRYGSGGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLP 908
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 51 LSLATQHILIKCYWNVDCIMSEVNESIAAGKHADKHNTD-GDNDSGVDESTQGHDMNGSP 227
L L + ++ C++ VD + ++VN + + + + D +DES GH SP
Sbjct: 182 LFLGHRDSVVGCFFGVDKMTNKVNRAFTIARDGYIFSWGYTEKDVKMDESEDGHSEPPSP 241
Query: 228 GSPNK 242
+P++
Sbjct: 242 VTPDR 246
>At1g73660.1 68414.m08530 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 1030
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 159 NTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 257
N+DGD+ SG E D N P S ++I K
Sbjct: 692 NSDGDDGSGGHEPQGSGDSNHGPNSGGERISDK 724
>At1g01730.1 68414.m00092 expressed protein
Length = 224
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 126 SIAAGKHADKHNTDGDNDSGVDESTQGHDM--NGSPGS 233
S+ +KH++DGD D V S G + +G PG+
Sbjct: 156 SVLRSSETEKHSSDGDGDKVVGGSAFGWNFITSGGPGT 193
>At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)
family protein contains Pfam profile: PF05028 poly
(ADP-ribose) glycohydrolase (PARG)
Length = 532
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 90 WNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQ 203
+ +D ++ EVN++ + H K+N D +D ST+
Sbjct: 364 YKLDALIREVNKAFSGYMHQCKYNIDVKHDPEASSSTK 401
>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein contains Pfam profiles PF02201: BAF60b domain of
the SWIB complex, PF02213: GYF domain, PF00628:
PHD-finger
Length = 824
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +3
Query: 105 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKK 245
+ ++ + AG+ D+ NT + G + GH + P S + +
Sbjct: 386 VTETMSYQVNAGRSCDRLNTSEQHQEGESQQLNGHSIQVRPSSSDSR 432
>At1g79410.1 68414.m09254 transporter-related low similarity to
organic anion transporter 3 [Rattus norvegicus]
GI:5545293; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 515
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 352 GGFSGVLAVALLLEDRERLAFKLLLDFSF---VG-NLLGIFL 239
GG SGVL + L R ++AF L L F +G NL+ I+L
Sbjct: 387 GGASGVLCFVMSLYGRTKIAFALELGSFFCARIGFNLMAIYL 428
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 147 ADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKE 272
+D +++DGDN G D+S + + S S + + + P E
Sbjct: 90 SDSNSSDGDNGGGRDDSKKIDSSSSSSSSDSTSLGIREPVYE 131
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 117 VNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNK 242
+NES + ++ GD S E G+D N P NK
Sbjct: 214 MNESNSTATAGEEERVCGDEPSQTREDDSGNDKNPDPDPVNK 255
>At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ family
contains Pfam profile: PF01960 ArgJ family
Length = 468
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 147 RVFPQQLIHLLPTLCNQRSSN 85
R+ ++L+H LPTL N RS +
Sbjct: 179 RIKKEELLHALPTLVNSRSDS 199
>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1456
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 63 TQHILIKCYWNVDCIMSEVNESIAAGKHA 149
T++I +KC C+ SEV + + KHA
Sbjct: 208 TEYIKVKCIATGSCVDSEVFKGLVFKKHA 236
>At5g65030.1 68418.m08180 expressed protein ; expression supported
by MPSS
Length = 202
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 307 GLQAKVQQLKHQRIHHQLKRKK 372
G +A V++LK QR+ +L+RKK
Sbjct: 72 GDEAAVKELKQQRVVFELRRKK 93
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 78 IKCYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKI 248
+ + +VD + S + +I+AGK H T+ D ++S+ D + S +K +
Sbjct: 477 LTAHTSVDLLASANSLNISAGKTFCSHRTEAAEDEKAEDSSVIDDSSDEHASLSKMV 533
>At4g26940.2 68417.m03877 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 306
Score = 26.2 bits (55), Expect = 7.4
Identities = 20/90 (22%), Positives = 35/90 (38%)
Frame = +3
Query: 105 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKEXXXX 284
I+ +V +S A + DK + + + + Q MNGSP S + K+P + ++
Sbjct: 83 ILGDVYKSPDAIQTLDKTISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMV 142
Query: 285 XXXXXXXXXXXXXXXXXXPENPPSIEKKKV 374
PP E+KK+
Sbjct: 143 VGVNTAFSSRKRRDSVRATWMPPGEERKKL 172
>At4g26940.1 68417.m03876 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 407
Score = 26.2 bits (55), Expect = 7.4
Identities = 20/90 (22%), Positives = 35/90 (38%)
Frame = +3
Query: 105 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKEXXXX 284
I+ +V +S A + DK + + + + Q MNGSP S + K+P + ++
Sbjct: 83 ILGDVYKSPDAIQTLDKTISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMV 142
Query: 285 XXXXXXXXXXXXXXXXXXPENPPSIEKKKV 374
PP E+KK+
Sbjct: 143 VGVNTAFSSRKRRDSVRATWMPPGEERKKL 172
>At3g42140.1 68416.m04327 hypothetical protein
Length = 273
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 111 SEVNESIAAGKHADKHNTDGDNDSGVDE-STQGHDMNGSPGSPNKKIPSK 257
SE S G HAD + D DND+ D G + + G N++ P +
Sbjct: 168 SECPTSGNQGPHADDDDDDDDNDANEDHPDVPGDNPDQVHGPMNQQHPEE 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,991
Number of Sequences: 28952
Number of extensions: 134111
Number of successful extensions: 438
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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