Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C06
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 52 5e-08
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 36 0.004
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.3
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 2.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.9
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.2
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 26 5.2
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 26 5.2
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 6.9
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 52.4 bits (120), Expect = 5e-08
Identities = 28/87 (32%), Positives = 50/87 (57%)
Frame = +2
Query: 356 NIICFQELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEK 535
N+I F EL + C + + AE A EGP+ + + LA KY + I+ E++EK
Sbjct: 39 NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94
Query: 536 HADFLWNTTVIISDTGNVIGKHRKNHI 616
++ ++N+ + I++ GN+ G +RK H+
Sbjct: 95 QSNIIYNSCIYITENGNLGGVYRKVHL 121
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 36.3 bits (80), Expect = 0.004
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +2
Query: 227 RIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 406
R ++G++Q +A D+ N Q + K+++ A + G N+I E++N P+
Sbjct: 42 RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--- 90
Query: 407 REKQPWCEFAESAEEG-PTTRFLRELAVKYAMVIVS-SILERDEKHADFLWNTTVIISDT 580
+ ++AE EE P+ + L +A + SI ER + L+NT ++ +
Sbjct: 91 --TGYFNQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGK---LYNTAMVFDPS 145
Query: 581 GNVIGKHRKNHI 616
G +I HRK H+
Sbjct: 146 GKLIAVHRKIHL 157
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 497 MVIVSSILERDEKHAD 544
+++VS++LE DEKH D
Sbjct: 998 LIVVSNLLEMDEKHVD 1013
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 380 WNMPFAFCTREKQPWCEFA-ESAEEGPTTRFLRELAVKYAMVIVSSILERDEK 535
+N F +EK+ E E A G T+F+R V+YA I IL+ +K
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKK 448
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 50 IVNNNLSGKDLEEFNRIYYGR 112
++ N L K+LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 71 GKDLEEFNRIYYG-RKDHFEIKLKDTS 148
GKD E RIY RK+ F+I LK S
Sbjct: 116 GKDFTEMTRIYLSIRKNFFQICLKTHS 142
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 467 FLRELAVKYAMVIVSSILERDEKHADFLWN 556
+LR+L A + I+ RD K +F WN
Sbjct: 162 YLRDLLKGLAHIDAKGIIHRDIKPGNFAWN 191
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 284 INEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNM 388
++ K +D+VK I + + NI C E WNM
Sbjct: 292 LDSSKHPRWDRVKNIDPIKFEFADNIKCALEAWNM 326
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 387 CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWLSNTPW*SCLLSSRGTRNTPTF 548
C +L A G A PR R +F V+W S T W + + S T++T F
Sbjct: 134 CSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWSTTAWTTFVASI--TQSTANF 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,465
Number of Sequences: 5004
Number of extensions: 58595
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -