Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C06
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 196 9e-51
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 48 5e-06
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 46 2e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 43 2e-04
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 35 0.062
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 30 1.3
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875... 30 1.3
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 29 4.1
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 5.4
07_03_0280 + 16219427-16220236,16220660-16220908 28 5.4
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 28 7.1
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148... 27 9.4
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 9.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 196 bits (479), Expect = 9e-51
Identities = 102/207 (49%), Positives = 133/207 (64%), Gaps = 8/207 (3%)
Frame = +2
Query: 35 QSLEAIVNNNLSGKDLEEFNRIYYGR---KDHFEIKLKDTSXXXXXXXXXXXXXXXFPAK 205
+SL ++ +NLS + +E +R+ G + I L + + F A
Sbjct: 27 ESLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDAD 86
Query: 206 KEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQ---- 373
KE R PR+++VG+IQ+SIAIPT +QKKAI +KVK +ID AG GVNI+C Q
Sbjct: 87 KEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQL 146
Query: 374 -ELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADFL 550
E W MPFAFCTREK+ WCEFAE + G +T+FL++LA KY MVIVS ILERD H + +
Sbjct: 147 SEAWTMPFAFCTREKR-WCEFAEPVD-GESTQFLQQLAKKYNMVIVSPILERDVNHGEIV 204
Query: 551 WNTTVIISDTGNVIGKHRKNHIPRVGD 631
WNT V+I + GN+IG HRKNHIPRVGD
Sbjct: 205 WNTAVVIGNHGNIIGIHRKNHIPRVGD 231
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +2
Query: 311 DKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVK 490
D +++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA +
Sbjct: 29 DTAERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKE 87
Query: 491 YAMVIVSSILERDEKHADFLWNTTVIISDTGNVIGKHRKNHIP 619
+VI S E + +A + N+ II G +G +RK+HIP
Sbjct: 88 LEVVIPVSFFE-EANNAHY--NSVAIIDADGTDLGLYRKSHIP 127
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +2
Query: 314 KVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEEG----PTTRFLREL 481
+ ++ I+ A G ++ E+WN P++ + E+AE E G P+ + E+
Sbjct: 65 RAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDAAPSFSMMSEV 119
Query: 482 AVKYAMVIVSSILERDEKHADFLWNTTVIISDTGNVIGKHRKNHI 616
A + +V + E+ + L+NT + G + GKHRK H+
Sbjct: 120 ARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +2
Query: 362 ICFQELWNMPFAFCTREKQPWCEFAESAEEG--PTTRFLRELAVKYAMVIVSSILERDEK 535
+ FQE+WN P++ E P E + G P+ L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 536 HADFLWNTTVIISDTGNVIGKHRKNHI 616
+ L+NT +I G + KHRK H+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHL 95
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 34.7 bits (76), Expect = 0.062
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Frame = +2
Query: 302 AIFDKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 448
A DK +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 449 E--GPTTRFLRELAVKYAMVIVSSILERDEKHADFLWNTTVIISDTGNVIGKHRK 607
+ GP L LA KY + +V ++ER L+NT + G +GKHRK
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK 158
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 452 GPTTRFLRELAVKYAMVIVSSILERDEKHADFLWNTTVIISDTGNVIGKHRK 607
GP L +A KY + +V ++ER+ L+ + + G +GKHRK
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK 162
>02_02_0300 -
8746526-8747224,8749033-8749089,8749414-8749650,
8750061-8750172,8750258-8750538,8752032-8752244,
8753105-8753636,8753871-8753899
Length = 719
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 147
P N K R +Q +WQ RGV ++ L + P R +IKR++
Sbjct: 419 PDNLKERILRHEQYRWQETRGVDEEGLLSNLPKNLRREIKRHL 461
>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 RANM-DHETQSLEAIVNNNLSGKDLEEFNRIYYG 109
R N+ D+ S E+ N + G+D++E+ R YYG
Sbjct: 1138 RQNLEDYTMDSSESAQMNPVPGRDVQEYARTYYG 1171
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 432 SLNLPRKDRLHAFSVSWL 485
SLN P++DRLHA W+
Sbjct: 182 SLNKPQRDRLHALGFDWV 199
>07_03_0280 + 16219427-16220236,16220660-16220908
Length = 352
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 275 DRPINEQKKAIFDKVKKIIDVAGQEG 352
D IN + +FDK+ ++DVAG G
Sbjct: 190 DMAINGSGRQVFDKITSMVDVAGGTG 215
>06_02_0107 -
11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/63 (19%), Positives = 28/63 (44%)
Frame = -3
Query: 603 RCFPITFPVSLIITVVFQRKSACFSSLSRIEDTITMAYLTASSRRKRVVGPSSADSANSH 424
+C P F + + ++ + L R+ DT+ ++ + ++ K++ S D H
Sbjct: 570 KCHPHEFCMKMFARALYANPNRSNKELGRLRDTLQISENSLDTKAKKIFKFSYRDLHREH 629
Query: 423 QGC 415
+ C
Sbjct: 630 KTC 632
>06_03_0293 +
19212963-19212965,19213900-19214235,19214658-19214870,
19216134-19216408,19216504-19216615,19217181-19217417,
19217445-19217462
Length = 397
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 147
P N K R ++ +W + GV ++LL P R IKR++
Sbjct: 343 PENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHL 385
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 147
P N K R ++ +W + GV ++LL P R IKR++
Sbjct: 457 PENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHL 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,637,798
Number of Sequences: 37544
Number of extensions: 370086
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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