Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C06
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             50   2e-06
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 44   1e-04
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          37   0.016
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  29   2.4  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   4.1  
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)    29   4.1  
SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17)                  28   5.5  
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)                    28   5.5  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   7.2  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.2  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       28   7.2  
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 27   9.6  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.6  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 43/92 (46%)
 Frame = +2

Query: 20  MDHETQSLEAIVNNNLSGKDLEEFNRIYYGRKDHFEIKLKDTSXXXXXXXXXXXXXXXFP 199
           M  E +SL   +  NL  +DL+E  RI YG     ++ L   +                 
Sbjct: 1   MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59

Query: 200 AKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQ 295
           A  E+ R PR+V++G +Q+ I  PT+ PI +Q
Sbjct: 60  AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 230 IVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 409
           + ++G++Q  +A+  ++  N Q+    +K+K+ +      G  I+   E +N P+     
Sbjct: 5   VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52

Query: 410 EKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVS-SILERDEKHADFLWNTTVIISDTGN 586
             Q + ++AE    G ++  L E+A +    IV  SI ER       L+NT++    +GN
Sbjct: 53  -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108

Query: 587 VIGKHRKNHI 616
           ++GKHRK H+
Sbjct: 109 LMGKHRKIHL 118


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
 Frame = +2

Query: 221 PPRIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMPFAF 400
           P  + ++G++Q  +A+  ++  N Q+    +K+K+ +      G  I+   E +N P+  
Sbjct: 4   PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54

Query: 401 CTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVS-SILERDEKHADFLWNTTVIISD 577
                Q + ++AE    G ++  L E+A +    IV  SI ER       L+NT++    
Sbjct: 55  ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107

Query: 578 TGNVIGKHRK 607
           +GN++GKHRK
Sbjct: 108 SGNLMGKHRK 117


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +2

Query: 431 FAESAEE--GPTTRFLRELAVKYAMVIVS-SILERDEKHADFLWNTTVIISDTGNVIGKH 601
           F + AEE  G ++  L E+A +    IV  SI ER       L+NT++    +GN++GKH
Sbjct: 12  FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69

Query: 602 RKNHI 616
           RK H+
Sbjct: 70  RKIHL 74


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 466 ACSRSFLGRFSEFAPGLFLPRAESEGHVP*FLETNYINSLLTGDIDYLFYL 314
           AC    LG  S    G F P     G    F   + I+S+L+GD++  FY+
Sbjct: 110 ACYLLLLGSLSSICYGEF-PDVAKAGKNSVFARVSTISSVLSGDVNITFYI 159


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 490  FDSQLTEKACSRSFLGRFSEFAPGLFLPRAESEG 389
            FD     K C + +    + F PG +LPR  + G
Sbjct: 1354 FDLGAVPKQCHQEYASAITTFRPGRYLPRCTTSG 1387


>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
          Length = 774

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 417 NPGANSLNLPRKDRLHAFSVSWL--SNTPW*SCLLSSRGTRNTPTF 548
           +PG N+ N   + R  A  ++++   N PW +CL  S G +NTP+F
Sbjct: 515 SPGNNNKNA--RSRRKALGLAYVVDENPPWYACL--SLGFQNTPSF 556


>SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17)
          Length = 490

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 531 SSLSRIEDTITMAYLTASSRRKRVVGPSSADSANSHQ 421
           S +S +++ I+      + +R+++ GPS+ D  +SHQ
Sbjct: 163 SLMSPVKEFISNFVHRKAGKRRQIAGPSTTDDISSHQ 199


>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 949

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 200 AKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKA-IFDKVKKIIDV 337
           A   +  P   VK     H + IPT++PI E + + ++ K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 343 TGDIDYLFYLIENCFFLLVNWTVGWYRDRVLNNTNFNDPRRAGLLLFSRESVRGNLKIS 167
           T +  Y+FY I N   ++V+W  G   +++ N TN+  P   G+ +    +  GN  IS
Sbjct: 556 TNEAVYMFYSIVNGTNVIVDWDFG-DTNKLTNVTNWAFP-SPGVTVIHTYTAPGNYSIS 612


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 487  DSQLTEKACSRSFLGRFSEFAPGLFLPRAESEG 389
            D++    AC R +        PG FLPR   +G
Sbjct: 4757 DTRPQPSACERHYTAALRNHVPGRFLPRCRPDG 4789


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 399 KAKGMFHSSWKQIILTP 349
           +AKG+FH  WK+I + P
Sbjct: 365 RAKGLFHHKWKKITVEP 381


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 445 RGRTDYTLSP*AGCQIRHGNRVFYPREGRETRRLSLEYDGYY 570
           +GRT +T +P      + G  +  P   R  RRLS+E  GY+
Sbjct: 214 QGRTTFT-NPATNKPYKAGETIHQPHLARFLRRLSVEGKGYF 254


>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 260 IAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMP 391
           IAIPT    N   ++I  ++ ++  V    GV+I C  E W  P
Sbjct: 107 IAIPTLLVCNA--RSISSRIDELDGVVAHNGVDIACITESWLTP 148


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 481 QLTEKACSRSFLGRFSEFAPGLFLPRAESEGHV 383
           Q T+K CSR+F    + F PGL L  +   GHV
Sbjct: 531 QRTDKLCSRAF----TSFPPGLQLCTSSLPGHV 559


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 537  CFSSLSRIEDTITMAYLTASSRRKRVVGPSSADSANSHQGCFSRVQKAKGMFHSSWKQII 358
            CF  L      +  A L ASS   R  GP  A      +G ++    A+   H+ W Q+ 
Sbjct: 7016 CFKPLGVGSRRLPDANLRASSSWNRFHGPERARLRQPKKGSYTGAWCARHNNHNQWLQVN 7075

Query: 357  L 355
            L
Sbjct: 7076 L 7076


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,567,320
Number of Sequences: 59808
Number of extensions: 441672
Number of successful extensions: 983
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)