Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C05
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   0.85 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   2.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.0  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   7.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   7.9  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 102 PTGAPPSACFDMIPGHAADVQTVPAPYT--ITTAVSSVKAGHSIDVVISGKTP 254
           P     S  F+ IP    +V+++   Y+  + T +S +KA   +  ++ GK P
Sbjct: 257 PANYITSTAFESIPESGHNVRSLEITYSGSLLTNISLIKADDLVGALVDGKLP 309


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -3

Query: 272  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 147
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 168 VPAPYTITTAVSSVKAGHSIDVVISG 245
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 287 SFQEDAGHFVFGCFAADNHVNGMTSF 210
           +F+E+ GH   G      HV GM S+
Sbjct: 27  TFEENRGHSFEGVTLQRRHVKGMKSY 52


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = -3

Query: 359 TVEGLREGIIGAYGPSADDLVTLTSFQEDAGHFVFGCFAADNHVNGMTSFYRADSCSDGV 180
           T E L+  ++ AYG +  +    +SF    GH          +V  +  F       DG 
Sbjct: 174 TAEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGA 233

Query: 179 R 177
           +
Sbjct: 234 K 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,848
Number of Sequences: 5004
Number of extensions: 37447
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)