Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C05
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   1.5  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)                  27   4.5  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              27   4.5  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  27   7.8  
SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)              27   7.8  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_19324| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_29649| Best HMM Match : Sushi (HMM E-Value=4.1e-18)                 27   7.8  

>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 192 TAVSSVKAGHSIDVVISGKTPEDK 263
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 131  RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRH 274
            RHD    C  S ++   +    C   + W     GY+RQ TR    +H
Sbjct: 1789 RHDKGVECLPSCTSDGSYEELQCIRDECWCVDKYGYERQATRMIGRKH 1836


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 321 RSKCRRSC-HPDELPGGCRPFC 259
           R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 377 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 270
           GV WF  ++  +R  I GA GP+ +     T   EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321


>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 408 LILWHASCGS--RRYLVHHS*GVARRYHRGLRSK 313
           L+LW  + GS  RR+++HH  G  +  H+ L  K
Sbjct: 42  LLLWVLNRGSKDRRFVIHHGQGNHKSNHKNLHKK 75


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 148  TLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAAKHPKTKWPASSW 282
            +LL  R  Q   P    S     V  + WL+ +  P++ WP S W
Sbjct: 1582 SLLEVRNSQNCDPIFVASVFVATVARVAWLTLSLWPRSLWPWSFW 1626


>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
          Length = 346

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 102 PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 257
           P G  P  C  + PG+  DV  +PA Y     +     G  + ++  G  P+
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADYGPDVCIIPPGYGPDVCIIPPGYGPD 324


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +3

Query: 261 KMAGILL-EARQGDKIVGTWTV---SPDD-TFSQPLNCGEPNNAVT 383
           K+ GI L   ++G K+V +WTV   +P    F+ P   G+P+  +T
Sbjct: 625 KVKGIFLWHVKKGGKVVSSWTVDLKTPGGAVFTGPPKGGKPDTTIT 670


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 365  FTTVEGLREGII-GAYGPSADDLVT-LTSFQEDAGHFVFGCFAADNHVNGMTSF 210
            F T+  +++ I   A+   +  L+T  T+F   A H+ F CF AD   NG   F
Sbjct: 2271 FGTIANVQKKISEAAFTDDSPTLITNATTFTIRASHYEFSCFVADIG-NGTVGF 2323


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +2

Query: 131 RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRHPPGSSSG*QDRR 310
           +H  RAR   +++T       + + GK+ + H +  + +NTRR+ G  PP        R+
Sbjct: 96  KHQKRAR---TETTRRGQEQKTPEEGKNRN-HQKKARTENTRRRQGEKPPEEGKNRNTRK 151

Query: 311 HLDRK 325
             ++K
Sbjct: 152 RQEQK 156


>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
          Length = 568

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 119 RRCSGGVSAGKRHHRCNCYYVSEHHLF 39
           R+ SG  +AG +H    C+ V + HLF
Sbjct: 455 RKHSGMFAAGMQHDSQECFAVLQEHLF 481


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 164 LNISSVPWDHVEARARRCSGGVSA 93
           +N+S +P  H   RA  C GG++A
Sbjct: 381 INVSEIPLTHKCPRAESCLGGLNA 404


>SB_19324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -3

Query: 296 TLTSFQEDAGHFVFGCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSV 147
           T+T+FQ   G      F A + V  MT+F +AD  S+ V   YC NI+ V
Sbjct: 101 TMTAFQAQQGVETLTAFQAQHGVETMTAF-QADFTSNAV-LLYC-NITLV 147


>SB_29649| Best HMM Match : Sushi (HMM E-Value=4.1e-18)
          Length = 214

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 333 HRGLRSKCRRSCHPDELPGGCRPFCLRVFCR 241
           +R + SK R +C  D    G  P C R++CR
Sbjct: 125 YRVIGSKTR-TCQADTTWSGINPSCERIYCR 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,494
Number of Sequences: 59808
Number of extensions: 334526
Number of successful extensions: 1078
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)