Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C05
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   0.52 
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   0.91 
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   1.6  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   3.7  
At4g04650.1 68417.m00680 hypothetical protein                          26   8.5  
At3g30240.1 68416.m03821 hypothetical protein                          26   8.5  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    26   8.5  
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    26   8.5  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 200 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 45
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 318 SKCRRSCHPDELPGG-CRPFCLRVFC 244
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 254
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 355 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 239
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At4g04650.1 68417.m00680 hypothetical protein 
          Length = 332

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 149 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHHLFYKFQ 27
           V W+ +  R R  + G+S       CN +  S  HLF++ Q
Sbjct: 149 VAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQ 189


>At3g30240.1 68416.m03821 hypothetical protein
          Length = 189

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 404 FFGMHLVGHGVIWFTTVEG 348
           FF  +LVGH +  FT+VEG
Sbjct: 84  FFAENLVGHALDSFTSVEG 102


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -3

Query: 197 SCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYV 57
           S +   + W CL  SS  W  ++ R  +    ++A       N +Y+
Sbjct: 69  SLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYL 115


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 DSTSALHHHYSCQLGKSWSFH*RGYQRQNT 253
           +S S   H+Y C +    S+  +GY  +NT
Sbjct: 207 ESDSGKTHYYQCHVAPDGSYRLKGYFLENT 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,213,881
Number of Sequences: 28952
Number of extensions: 220568
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)